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This page was generated on 2025-10-13 11:42 -0400 (Mon, 13 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1351/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MPAC 1.2.0  (landing page)
Peng Liu
Snapshot Date: 2025-10-09 13:40 -0400 (Thu, 09 Oct 2025)
git_url: https://git.bioconductor.org/packages/MPAC
git_branch: RELEASE_3_21
git_last_commit: bacbee2
git_last_commit_date: 2025-04-15 13:36:36 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for MPAC on kunpeng2

To the developers/maintainers of the MPAC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MPAC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: MPAC
Version: 1.2.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:MPAC.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings MPAC_1.2.0.tar.gz
StartedAt: 2025-10-10 11:19:08 -0000 (Fri, 10 Oct 2025)
EndedAt: 2025-10-10 11:25:14 -0000 (Fri, 10 Oct 2025)
EllapsedTime: 366.4 seconds
RetCode: 0
Status:   OK  
CheckDir: MPAC.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:MPAC.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings MPAC_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/MPAC.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MPAC/DESCRIPTION’ ... OK
* this is package ‘MPAC’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MPAC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
clSamp 6.481  0.276   6.771
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MPAC.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL MPAC
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘MPAC’ ...
** this is package ‘MPAC’ version ‘1.2.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MPAC)

Tests output

MPAC.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MPAC)
> 
> test_check("MPAC")
Loading required package: data.table
Ignoring unknown labels:
* fill : ""
* linetype : "1"
Please provide PARADIGM binary. See vignette for details
Please provide PARADIGM binary. See vignette for details
Please provide PARADIGM binary. See vignette for details
Please provide PARADIGM binary. See vignette for details
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 36 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 36 ]
> 
> proc.time()
   user  system elapsed 
 37.535   1.647  39.344 

Example timings

MPAC.Rcheck/MPAC-Ex.timings

nameusersystemelapsed
clSamp6.4810.2766.771
colPermIPL1.0400.0511.097
colRealIPL0.0110.0000.012
conMtf0.1330.0000.152
fltByPerm1.0830.0001.086
getSignifOvrOnCl0.0540.0000.055
ovrGMT1.0160.0011.020
pltConMtf1.2220.0231.255
pltMtfPrtIPL0.9650.0240.992
pltNeiStt3.9660.0764.056
pltOvrHm0.6710.0160.689
pltSttKM0.9600.0120.974
ppCnInp0.0290.0000.030
ppPermInp1.1060.0801.189
ppRealInp1.1970.0001.202
ppRnaInp1.1530.2581.253
runPermPrd3.1480.3433.499
runPrd1.0400.0161.058
subNtw1.0250.0001.081