Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1297/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MODA 1.32.0 (landing page) Dong Li
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the MODA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MODA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MODA |
Version: 1.32.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MODA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MODA_1.32.0.tar.gz |
StartedAt: 2024-12-20 06:14:22 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 06:18:57 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 274.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MODA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MODA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MODA_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/MODA.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MODA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MODA’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MODA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE MIcondition: no visible binding for global variable ‘pwd’ WeightedModulePartitionSpectral: no visible binding for global variable ‘indicator’ Undefined global functions or variables: indicator pwd * checking Rd files ... NOTE checkRd: (-1) WeightedModulePartitionAmoutain.Rd:25: Lost braces; missing escapes or markup? 25 | \item{power}{the power parameter of WGCNA, W_{ij}=|cor(x_i,x_j)|^pwr} | ^ checkRd: (-1) WeightedModulePartitionHierarchical.Rd:20: Lost braces; missing escapes or markup? 20 | \item{power}{the power parameter of WGCNA, W_{ij}=|cor(x_i,x_j)|^power} | ^ checkRd: (-1) WeightedModulePartitionLouvain.Rd:23: Lost braces; missing escapes or markup? 23 | \item{power}{the power parameter of WGCNA, W_{ij}=|cor(x_i,x_j)|^power} | ^ checkRd: (-1) WeightedModulePartitionSpectral.Rd:19: Lost braces; missing escapes or markup? 19 | \item{power}{the power parameter of WGCNA, W_{ij}=|cor(x_i,x_j)|^power} | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... NOTE Package has no Sweave vignette sources and no VignetteBuilder field. * checking examples ... OK * checking package vignettes ... NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/MODA.Rcheck/00check.log’ for details.
MODA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MODA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘MODA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MODA)
MODA.Rcheck/MODA-Ex.timings
name | user | system | elapsed | |
CompareAllNets | 1.516 | 0.097 | 1.683 | |
PartitionDensity | 0.108 | 0.008 | 0.119 | |
PartitionModularity | 0.099 | 0.010 | 0.114 | |
WeightedModulePartitionAmoutain | 2.482 | 0.277 | 2.934 | |
WeightedModulePartitionHierarchical | 0.462 | 0.024 | 0.517 | |
WeightedModulePartitionLouvain | 0.108 | 0.013 | 0.174 | |
WeightedModulePartitionSpectral | 1.523 | 0.023 | 1.687 | |
comparemodulestwonets | 1.344 | 0.067 | 1.532 | |
datExpr1 | 0.004 | 0.003 | 0.007 | |
datExpr2 | 0.004 | 0.002 | 0.007 | |