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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1186/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MEDME 1.66.0  (landing page)
Mattia Pelizzola
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/MEDME
git_branch: RELEASE_3_20
git_last_commit: f612263
git_last_commit_date: 2024-10-29 09:29:59 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


INSTALL results for MEDME on nebbiolo2

To the developers/maintainers of the MEDME package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MEDME.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MEDME
Version: 1.66.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL MEDME
StartedAt: 2024-12-19 15:44:19 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 15:44:32 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 13.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL MEDME
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘MEDME’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function ‘MEDMEweight’:
MEDMEweight.c:90:33: warning: ‘B’ may be used uninitialized [-Wmaybe-uninitialized]
   90 |       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
      |                                 ^~~~~~~~
MEDMEweight.c:36:10: note: ‘B’ was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |          ^
MEDMEweight.c:89:9: warning: ‘C’ may be used uninitialized [-Wmaybe-uninitialized]
   89 |       if(Mlim < C) {Mlim = C;}
      |         ^
MEDMEweight.c:36:12: note: ‘C’ was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |            ^
MEDMEweight.c:88:9: warning: ‘D’ may be used uninitialized [-Wmaybe-uninitialized]
   88 |       if(Mlim > D) {Mlim = D;} // the model is only meaningful for MeDIPw in (C,D)
      |         ^
MEDMEweight.c:36:14: note: ‘D’ was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |              ^
MEDMEweight.c:90:33: warning: ‘E’ may be used uninitialized [-Wmaybe-uninitialized]
   90 |       AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
      |                                 ^~~~~~~~
MEDMEweight.c:36:16: note: ‘E’ was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |                ^
MEDMEweight.c:92:9: warning: ‘Min’ may be used uninitialized [-Wmaybe-uninitialized]
   92 |       if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
      |         ^
MEDMEweight.c:36:19: note: ‘Min’ was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |                   ^~~
MEDMEweight.c:91:9: warning: ‘Max’ may be used uninitialized [-Wmaybe-uninitialized]
   91 |       if(AMSfinal[i] > Max) {AMSfinal[i] = Max;}
      |         ^
MEDMEweight.c:36:24: note: ‘Max’ was declared here
   36 |   double B,C,D,E, Min, Max, Mlim;
      |                        ^~~
MEDMEweight.c:78:19: warning: ‘weight’ may be used uninitialized [-Wmaybe-uninitialized]
   78 |         weightSum = weightSum + weight;
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
MEDMEweight.c:30:10: note: ‘weight’ was declared here
   30 |   double weight, relPos;
      |          ^~~~~~
gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o MEDME.so MEDMEweight.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-MEDME/00new/MEDME/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MEDME)