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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1143/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAIT 1.40.0  (landing page)
Pol Sola-Santos
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/MAIT
git_branch: RELEASE_3_20
git_last_commit: 2da6bb9
git_last_commit_date: 2024-10-29 09:55:51 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped


BUILD results for MAIT on kjohnson1

To the developers/maintainers of the MAIT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAIT.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MAIT
Version: 1.40.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAIT
StartedAt: 2024-12-20 02:27:50 -0500 (Fri, 20 Dec 2024)
EndedAt: 2024-12-20 02:29:18 -0500 (Fri, 20 Dec 2024)
EllapsedTime: 87.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAIT
###
##############################################################################
##############################################################################


* checking for file ‘MAIT/DESCRIPTION’ ... OK
* preparing ‘MAIT’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MAIT_Vignette.Rnw’ using Sweave
Loading required package: CAMERA
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: xcms
Loading required package: BiocParallel

This is xcms version 4.4.0 


Attaching package: ‘xcms’

The following object is masked from ‘package:stats’:

    sigma

Loading required package: Rcpp
Loading required package: pls

Attaching package: ‘pls’

The following object is masked from ‘package:stats’:

    loadings


Attaching package: ‘MAIT’

The following objects are masked from ‘package:pls’:

    loadings, scores

The following object is masked from ‘package:BiocGenerics’:

    plotPCA

The following object is masked from ‘package:stats’:

    loadings

objc[61250]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[61250]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
objc[61249]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[61249]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Warning in parallel::mccollect(wait = FALSE, timeout = 1) :
  1 parallel job did not deliver a result
objc[61252]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[61252]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
objc[61251]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[61251]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.

Error: processing vignette 'MAIT_Vignette.Rnw' failed with diagnostics:
 chunk 2 (label = sampleProcessing) 
Error in reducer$value.cache[[as.character(idx)]] <- values : 
  wrong args for environment subassignment

--- failed re-building ‘MAIT_Vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘MAIT_Vignette.Rnw’

Error: Vignette re-building failed.
Execution halted