Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1106/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
LinkHD 1.20.0 (landing page) "Laura M Zingaretti"
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the LinkHD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LinkHD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: LinkHD |
Version: 1.20.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings LinkHD_1.20.0.tar.gz |
StartedAt: 2024-11-20 05:03:12 -0500 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 05:06:08 -0500 (Wed, 20 Nov 2024) |
EllapsedTime: 176.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: LinkHD.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings LinkHD_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/LinkHD.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘LinkHD/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘LinkHD’ version ‘1.20.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘LinkHD’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) VarSelection.Rd:40: Lost braces; missing escapes or markup? 40 | a general linear regression into the $X$ matrix (${Y_hat}=X(X'X)^(-1)X'Y$) and the matrix $X(X'X)^(-1)X'$ is the projection matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/LinkHD.Rcheck/00check.log’ for details.
LinkHD.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL LinkHD ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘LinkHD’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LinkHD)
LinkHD.Rcheck/LinkHD-Ex.timings
name | user | system | elapsed | |
Compromise_matrix-methods | 0.317 | 0.054 | 0.371 | |
DataProcessing | 0.005 | 0.000 | 0.005 | |
DistStatis-Class | 0.000 | 0.001 | 0.000 | |
DistStatis-CompromisePlot | 0.953 | 0.025 | 0.979 | |
DistStatis-CorrelationPlot | 0.466 | 0.060 | 0.526 | |
DistStatis-GlobalPlot | 0.517 | 0.004 | 0.521 | |
Euclid_Im-methods | 0.259 | 0.008 | 0.267 | |
Inertia_RV-methods | 0.230 | 0.001 | 0.231 | |
Inertia_comp-methods | 0.232 | 0.003 | 0.236 | |
LinkData-LinkData | 0.221 | 0.000 | 0.221 | |
OTU2Taxa-OTU2Taxa | 2.501 | 0.087 | 2.588 | |
RQO-methods | 0.227 | 0.031 | 0.258 | |
Read_Data | 0.001 | 0.000 | 0.000 | |
Ruminotypes | 0.001 | 0.000 | 0.001 | |
Taraoceans | 0.000 | 0.001 | 0.000 | |
Trajectories-methods | 0.375 | 0.081 | 0.455 | |
VarSelection-Class | 0.001 | 0.000 | 0.000 | |
VarSelection | 1.175 | 0.001 | 1.177 | |
VarTable-methods | 1.205 | 0.005 | 1.211 | |
Var_coordinates-methods | 1.217 | 0.002 | 1.218 | |
Variables-methods | 1.193 | 0.000 | 1.193 | |
compromise_coords-methods | 0.228 | 0.002 | 0.231 | |
correl-methods | 0.224 | 0.000 | 0.224 | |
dAB-dAB | 0.439 | 0.000 | 0.440 | |
sign_values-methods | 1.251 | 0.000 | 1.251 | |