Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1082/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
LinkHD 1.19.0 (landing page) "Laura M Zingaretti"
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the LinkHD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LinkHD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: LinkHD |
Version: 1.19.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:LinkHD.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings LinkHD_1.19.0.tar.gz |
StartedAt: 2024-06-10 04:33:49 -0400 (Mon, 10 Jun 2024) |
EndedAt: 2024-06-10 04:40:07 -0400 (Mon, 10 Jun 2024) |
EllapsedTime: 377.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: LinkHD.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:LinkHD.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings LinkHD_1.19.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/LinkHD.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'LinkHD/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'LinkHD' version '1.19.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'LinkHD' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) VarSelection.Rd:40: Lost braces; missing escapes or markup? 40 | a general linear regression into the $X$ matrix (${Y_hat}=X(X'X)^(-1)X'Y$) and the matrix $X(X'X)^(-1)X'$ is the projection matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.20-bioc/meat/LinkHD.Rcheck/00check.log' for details.
LinkHD.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL LinkHD ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'LinkHD' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LinkHD)
LinkHD.Rcheck/LinkHD-Ex.timings
name | user | system | elapsed | |
Compromise_matrix-methods | 0.53 | 0.06 | 0.59 | |
DataProcessing | 0.00 | 0.02 | 0.02 | |
DistStatis-Class | 0 | 0 | 0 | |
DistStatis-CompromisePlot | 1.14 | 0.06 | 1.20 | |
DistStatis-CorrelationPlot | 0.89 | 0.11 | 1.01 | |
DistStatis-GlobalPlot | 0.74 | 0.01 | 0.75 | |
Euclid_Im-methods | 0.44 | 0.00 | 0.44 | |
Inertia_RV-methods | 0.39 | 0.00 | 0.39 | |
Inertia_comp-methods | 0.32 | 0.00 | 0.33 | |
LinkData-LinkData | 0.32 | 0.02 | 0.33 | |
OTU2Taxa-OTU2Taxa | 2.72 | 0.13 | 2.85 | |
RQO-methods | 1.00 | 0.03 | 1.03 | |
Read_Data | 0 | 0 | 0 | |
Ruminotypes | 0 | 0 | 0 | |
Taraoceans | 0.00 | 0.02 | 0.01 | |
Trajectories-methods | 1.04 | 0.20 | 1.25 | |
VarSelection-Class | 0 | 0 | 0 | |
VarSelection | 2.02 | 0.06 | 2.08 | |
VarTable-methods | 2.17 | 0.05 | 2.22 | |
Var_coordinates-methods | 2.14 | 0.08 | 2.22 | |
Variables-methods | 1.99 | 0.04 | 2.03 | |
compromise_coords-methods | 0.43 | 0.04 | 0.47 | |
correl-methods | 0.42 | 0.00 | 0.42 | |
dAB-dAB | 0.69 | 0.01 | 0.71 | |
sign_values-methods | 1.69 | 0.02 | 1.70 | |