Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1039/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
InteractiveComplexHeatmap 1.14.0 (landing page) Zuguang Gu
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the InteractiveComplexHeatmap package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InteractiveComplexHeatmap.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: InteractiveComplexHeatmap |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:InteractiveComplexHeatmap.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings InteractiveComplexHeatmap_1.14.0.tar.gz |
StartedAt: 2024-12-20 01:28:30 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 01:34:01 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 331.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: InteractiveComplexHeatmap.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:InteractiveComplexHeatmap.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings InteractiveComplexHeatmap_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/InteractiveComplexHeatmap.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘InteractiveComplexHeatmap/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘InteractiveComplexHeatmap’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘InteractiveComplexHeatmap’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... NOTE There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘get_last_ht’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘test-all.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.20-bioc/meat/InteractiveComplexHeatmap.Rcheck/00check.log’ for details.
InteractiveComplexHeatmap.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL InteractiveComplexHeatmap ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘InteractiveComplexHeatmap’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (InteractiveComplexHeatmap)
InteractiveComplexHeatmap.Rcheck/tests/test-all.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > suppressWarnings(suppressPackageStartupMessages(library(InteractiveComplexHeatmap))) > > test_check("InteractiveComplexHeatmap") Point: x = 3.0 cm, y = 3.0 cm (measured in the graphics device) Search in heatmap 'matrix_1' - row slice 1, column slice 1 [matrix_1_heatmap_body_1_1]... overlap Point 1: x = 3.0 cm, y = 3.0 cm (measured in the graphics device) Point 2: x = 5.0 cm, y = 5.0 cm (measured in the graphics device) The heatmaps have been changed. Calcualte the new heatmap positions. Search in heatmap 'matrix_1' - row slice 1, column slice 1 [matrix_1_heatmap_body_1_1]... overlap [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] > > proc.time() user system elapsed 5.273 0.272 5.535
InteractiveComplexHeatmap.Rcheck/InteractiveComplexHeatmap-Ex.timings
name | user | system | elapsed | |
HeatmapInfoOutput | 0 | 0 | 0 | |
InteractiveComplexHeatmapModal | 0.001 | 0.000 | 0.001 | |
InteractiveComplexHeatmapOutput | 0 | 0 | 0 | |
InteractiveComplexHeatmapWidget | 0 | 0 | 0 | |
all_column_indices | 0 | 0 | 0 | |
all_row_indices | 0 | 0 | 0 | |
getPositionFromBrush | 0 | 0 | 0 | |
getPositionFromClick | 0 | 0 | 0 | |
getPositionFromDblclick | 0 | 0 | 0 | |
getPositionFromHover | 0 | 0 | 0 | |
htPositionsOnDevice | 0 | 0 | 0 | |
htShiny | 0.001 | 0.000 | 0.000 | |
htShinyExample | 0.022 | 0.001 | 0.022 | |
ht_shiny | 0.000 | 0.000 | 0.001 | |
interactivate.DESeqDataSet | 0 | 0 | 0 | |
interactivate | 0 | 0 | 0 | |
interactivate.kde | 0 | 0 | 0 | |
interactivateDensity2D | 0.000 | 0.000 | 0.001 | |
is_in_sub_heatmap | 0 | 0 | 0 | |
makeInteractiveComplexHeatmap | 0.000 | 0.000 | 0.001 | |
originalHeatmapOutput | 0.000 | 0.000 | 0.001 | |
rand_mat | 0.008 | 0.002 | 0.011 | |
record_observation | 0 | 0 | 0 | |
selectArea | 0.000 | 0.000 | 0.001 | |
selectPosition | 0 | 0 | 0 | |
subHeatmapOutput | 0 | 0 | 0 | |