Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 953/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.24.0 (landing page) Koustav Pal
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: HiCBricks |
Version: 1.24.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HiCBricks_1.24.0.tar.gz |
StartedAt: 2024-11-20 08:46:21 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 08:50:32 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 251.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HiCBricks_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/HiCBricks.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14) GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.24.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.559 | 0.080 | 1.641 | |
BrickContainer_change_output_directory | 1.288 | 0.024 | 1.313 | |
BrickContainer_get_path_to_file | 1.199 | 0.028 | 1.229 | |
BrickContainer_list_chromosomes | 1.192 | 0.032 | 1.226 | |
BrickContainer_list_experiment_name | 1.140 | 0.016 | 1.158 | |
BrickContainer_list_files | 1.189 | 0.035 | 1.228 | |
BrickContainer_list_output_directory | 1.115 | 0.068 | 1.186 | |
BrickContainer_list_resolutions | 1.113 | 0.048 | 1.164 | |
BrickContainer_unlink_resolution | 2.375 | 0.044 | 2.421 | |
Brick_add_ranges | 2.505 | 0.060 | 2.570 | |
Brick_call_compartments | 2.223 | 0.092 | 2.298 | |
Brick_export_to_sparse | 3.401 | 0.115 | 3.440 | |
Brick_fetch_range_index | 1.358 | 0.055 | 1.421 | |
Brick_fetch_row_vector | 1.871 | 0.068 | 1.944 | |
Brick_get_bintable | 1.201 | 0.040 | 1.244 | |
Brick_get_chrominfo | 1.123 | 0.016 | 1.142 | |
Brick_get_entire_matrix | 1.556 | 0.056 | 1.614 | |
Brick_get_matrix | 1.903 | 0.040 | 1.947 | |
Brick_get_matrix_mcols | 1.496 | 0.028 | 1.528 | |
Brick_get_matrix_within_coords | 2.166 | 0.052 | 2.222 | |
Brick_get_ranges | 1.155 | 0.016 | 1.173 | |
Brick_get_values_by_distance | 1.608 | 0.028 | 1.643 | |
Brick_get_vector_values | 1.506 | 0.051 | 1.558 | |
Brick_list_matrices | 1.103 | 0.023 | 1.129 | |
Brick_list_matrix_mcols | 1.069 | 0.024 | 1.095 | |
Brick_list_mcool_normalisations | 0 | 0 | 0 | |
Brick_list_mcool_resolutions | 0.000 | 0.000 | 0.001 | |
Brick_list_rangekeys | 1.142 | 0.024 | 1.173 | |
Brick_list_ranges_mcols | 1.147 | 0.012 | 1.162 | |
Brick_load_cis_matrix_till_distance | 1.367 | 0.040 | 1.410 | |
Brick_load_data_from_mcool | 0.000 | 0.000 | 0.001 | |
Brick_load_data_from_sparse | 0 | 0 | 0 | |
Brick_load_matrix | 1.450 | 0.028 | 1.481 | |
Brick_local_score_differentiator | 2.267 | 0.079 | 2.358 | |
Brick_make_ranges | 0.012 | 0.000 | 0.012 | |
Brick_matrix_dimensions | 1.453 | 0.056 | 1.513 | |
Brick_matrix_exists | 1.495 | 0.052 | 1.551 | |
Brick_matrix_filename | 1.461 | 0.044 | 1.512 | |
Brick_matrix_isdone | 1.458 | 0.004 | 1.465 | |
Brick_matrix_issparse | 1.441 | 0.036 | 1.481 | |
Brick_matrix_maxdist | 1.421 | 0.044 | 1.472 | |
Brick_matrix_minmax | 1.452 | 0.039 | 1.496 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 1.104 | 0.016 | 1.183 | |
Brick_return_region_position | 1.214 | 0.024 | 1.241 | |
Brick_vizart_plot_heatmap | 2.600 | 0.040 | 2.646 | |
Create_many_Bricks | 1.122 | 0.032 | 1.162 | |
Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
load_BrickContainer | 1.166 | 0.027 | 1.214 | |