| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:05 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 936/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Harshlight 1.78.0 (landing page) Maurizio Pellegrino
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the Harshlight package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Harshlight.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Harshlight |
| Version: 1.78.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL Harshlight |
| StartedAt: 2024-12-19 16:24:06 -0500 (Thu, 19 Dec 2024) |
| EndedAt: 2024-12-19 16:24:28 -0500 (Thu, 19 Dec 2024) |
| EllapsedTime: 21.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL Harshlight
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* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'Harshlight' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'extended_defects':
Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable]
564 | int num_points, *p_num_points; //number of points inside the median kernel
| ^~~~~~~~~~~~
Harshlight.c: In function 'image_dilation':
Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable]
948 | double cell_value;
| ^~~~~~~~~~
Harshlight.c: In function 'norm':
Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable]
1316 | double *sorted; double *sorted2;
| ^~~~~~~
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
1471 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
| ^
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
1474 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
| ^
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
1532 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
| ^
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
1542 | PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
| ^
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
1543 | PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
| ^
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
1555 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
| ^
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-Harshlight/00new/Harshlight/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harshlight)