Jason Ross
| Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/Harman |
| git_branch: devel |
| git_last_commit: 34dafe6 |
| git_last_commit_date: 2025-04-15 11:01:35 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-15 12:06 -0400 (Fri, 15 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4554 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 940/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Harman 1.37.0 (landing page) Jason Ross
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the Harman package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Harman.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Harman |
| Version: 1.37.0 |
| Command: rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=Harman.buildbin-libdir Harman_1.37.0.tar.gz |
| StartedAt: 2025-08-15 10:26:57 -0400 (Fri, 15 Aug 2025) |
| EndedAt: 2025-08-15 10:27:23 -0400 (Fri, 15 Aug 2025) |
| EllapsedTime: 26.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Harman_1.37.0.zip |
| PackageFileSize: 1.191 MiB |
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### Running command:
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### rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=Harman.buildbin-libdir Harman_1.37.0.tar.gz
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* installing *source* package 'Harman' ...
** this is package 'Harman' version '1.37.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -I"F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include" -std=c++0x -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Harman.cpp -o Harman.o
In file included from Harman.cpp:181:
CMapSelectKFromN.h:52:18: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
52 | CFactorials<T>(size_t maxN)
| ^~~~~~
CMapSelectKFromN.h:52:18: note: remove the '< >'
Harman.cpp: In function 'SEXPREC* HarmanMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
Harman.cpp:3008:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
3008 | else
| ^~~~
Harman.cpp:3022:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
3022 | std::vector<unsigned int> tr_std_tmp = Rcpp::as<std::vector<unsigned int> >(tr) ;
| ^~~
In file included from Harman.cpp:182:
CSelectRandom.h: In instantiation of 'std::vector<unsigned int>* CSelectRandom<T>::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long long unsigned int]':
Harman.cpp:1764:79: required from here
1764 | t_v_random32bit = _RandomSelect->ReturnVectOf32bitIntegersInRange_CSTDLIB(max_combinations, 0, 0, i_XvectSize ) ;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CSelectRandom.h:943:48: warning: comparison of integer expressions of different signedness: 'long long int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
943 | while (currval < howManyIN)
| ~~~~~~~~^~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o Harman.dll tmp.def Harman.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/meat/Harman.buildbin-libdir/00LOCK-Harman/00new/Harman/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Harman' as Harman_1.37.0.zip
* DONE (Harman)