Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 901/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GraphAlignment 1.70.0 (landing page) Joern P. Meier
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the GraphAlignment package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GraphAlignment.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: GraphAlignment |
Version: 1.70.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL GraphAlignment |
StartedAt: 2024-11-19 20:26:11 -0000 (Tue, 19 Nov 2024) |
EndedAt: 2024-11-19 20:26:27 -0000 (Tue, 19 Nov 2024) |
EllapsedTime: 16.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL GraphAlignment ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘GraphAlignment’ ... ** using staged installation ** libs using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GA_alloc.c -o GA_alloc.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GA_matrix.c -o GA_matrix.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GA_matrix_R.c -o GA_matrix_R.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GA_message.c -o GA_message.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GA_vector.c -o GA_vector.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GA_vector_R.c -o GA_vector_R.o GA_vector_R.c: In function 'GA_clamp_mode_from_R': GA_vector_R.c:139:9: warning: unused variable 'size' [-Wunused-variable] 139 | int size = LENGTH(robj); | ^~~~ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GraphAlignment.c -o GraphAlignment.o GraphAlignment.c: In function 'GA_encode_directed_graph': GraphAlignment.c:138:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 138 | if (matrix->elts[i][j] == 1) | ^ GraphAlignment.c:159:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 159 | if (matrix->elts[i][j] == 1) | ^ GraphAlignment.c: In function 'GA_directed_mode_from_R': GraphAlignment.c:264:9: warning: unused variable 'size' [-Wunused-variable] 264 | int size = LENGTH(robj); | ^~~~ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c lap.c -o lap.o lap.c: In function 'LAP_lap': lap.c:260:11: warning: 'min' may be used uninitialized [-Wmaybe-uninitialized] 260 | h = assigncost[i][j1] - v[j1] - min; | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lap.c:65:8: note: 'min' was declared here 65 | cost min, h, umin, usubmin, v2, *d; | ^~~ lap.c:293:19: warning: 'last' may be used uninitialized [-Wmaybe-uninitialized] 293 | for (k = 0; k <= last; k++) | ~~^~~~~~~ lap.c:64:30: note: 'last' was declared here 64 | col j, j1, j2, endofpath, last, low, up, *collist, *matches; | ^~~~ gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o GraphAlignment.so GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-GraphAlignment/00new/GraphAlignment/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GraphAlignment)