Weiliang Qiu
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/GeneSelectMMD |
| git_branch: RELEASE_3_20 |
| git_last_commit: 60828a5 |
| git_last_commit_date: 2024-10-29 09:31:02 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 805/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeneSelectMMD 2.50.0 (landing page) Weiliang Qiu
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the GeneSelectMMD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneSelectMMD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: GeneSelectMMD |
| Version: 2.50.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL GeneSelectMMD |
| StartedAt: 2024-11-19 20:32:39 -0000 (Tue, 19 Nov 2024) |
| EndedAt: 2024-11-19 20:33:00 -0000 (Tue, 19 Nov 2024) |
| EllapsedTime: 21.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL GeneSelectMMD
###
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* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘GeneSelectMMD’ ...
** using staged installation
** libs
using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’
using Fortran compiler: ‘GNU Fortran (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o
gfortran -fPIC -g -O2 -Wall -c Qfunc.f -o Qfunc.o
gfortran -fPIC -g -O2 -Wall -c blas.f -o blas.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c isnan.c -o isnan.o
gfortran -fPIC -g -O2 -Wall -c lbfgsb.f -o lbfgsb.o
lbfgsb.f:1409:25:
1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm,
| ^
Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
lbfgsb.f:1482:72:
1482 | t(nbreak) = tl/(-neggi)
| ^
Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fPIC -g -O2 -Wall -c lbfgsbDriver.f -o lbfgsbDriver.o
lbfgsbDriver.f:243:71:
243 | + wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax)
| 1
Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider using ‘-frecursive’, or increase the ‘-fmax-stack-var-size=’ limit, or change the code to use an ALLOCATABLE array. [-Wsurprising]
gfortran -fPIC -g -O2 -Wall -c linpack.f -o linpack.o
gfortran -fPIC -g -O2 -Wall -c llkhFun.f -o llkhFun.o
gfortran -fPIC -g -O2 -Wall -c myTtest.f -o myTtest.o
gfortran -fPIC -g -O2 -Wall -c paraEstLoop.f -o paraEstLoop.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c pt.c -o pt.o
gfortran -fPIC -g -O2 -Wall -c timer.f -o timer.o
gfortran -fPIC -g -O2 -Wall -c wiFun.f -o wiFun.o
gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneSelectMMD)