| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 890/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GOstats 2.72.0 (landing page) Bioconductor Package Maintainer
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | TIMEOUT | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the GOstats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOstats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GOstats |
| Version: 2.72.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats |
| StartedAt: 2024-11-19 19:17:42 -0500 (Tue, 19 Nov 2024) |
| EndedAt: 2024-11-19 19:26:40 -0500 (Tue, 19 Nov 2024) |
| EllapsedTime: 538.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats ### ############################################################################## ############################################################################## * checking for file ‘GOstats/DESCRIPTION’ ... OK * preparing ‘GOstats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection [WARNING] Could not parse YAML metadata at line 19 column 1: :2:68: Unexpected ' ' [WARNING] This document format requires a nonempty <title> element. Please specify either 'title' or 'pagetitle' in the metadata, e.g. by using --metadata pagetitle="..." on the command line. Falling back to 'GOstatsForUnsupportedOrganisms.knit' --- finished re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ --- re-building ‘GOstatsHyperG.Rmd’ using rmarkdown --- finished re-building ‘GOstatsHyperG.Rmd’ --- re-building ‘GOvis.Rmd’ using rmarkdown Warning in doTryCatch(return(expr), name, parentenv, handler) : "nodeAttrs" is not a graphical parameter Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped Killed