Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-04-28 13:00 -0400 (Mon, 28 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4832
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4574
merida1macOS 12.7.5 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4558
kjohnson1macOS 13.6.6 Venturaarm644.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" 4553
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 702/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExploreModelMatrix 1.20.0  (landing page)
Charlotte Soneson
Snapshot Date: 2025-04-24 15:01 -0400 (Thu, 24 Apr 2025)
git_url: https://git.bioconductor.org/packages/ExploreModelMatrix
git_branch: RELEASE_3_21
git_last_commit: 37f9457
git_last_commit_date: 2025-04-15 11:56:46 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    ERROR  
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    ERROR  


BUILD BIN results for ExploreModelMatrix on merida1

To the developers/maintainers of the ExploreModelMatrix package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ExploreModelMatrix.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ExploreModelMatrix
Version: 1.20.0
Command: rm -rf ExploreModelMatrix.buildbin-libdir && mkdir ExploreModelMatrix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ExploreModelMatrix_1.20.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ExploreModelMatrix.buildbin-libdir
StartedAt: 2025-04-25 13:20:01 -0400 (Fri, 25 Apr 2025)
EndedAt: 2025-04-25 13:20:37 -0400 (Fri, 25 Apr 2025)
EllapsedTime: 36.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ExploreModelMatrix.buildbin-libdir && mkdir ExploreModelMatrix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ExploreModelMatrix_1.20.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ExploreModelMatrix.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ExploreModelMatrix.buildbin-libdir ExploreModelMatrix_1.20.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ExploreModelMatrix’ ...
** this is package ‘ExploreModelMatrix’ version ‘1.20.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ExploreModelMatrix)


chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/CITATION: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/extdata/interface_overview.txt: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/extdata: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/LICENSE: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/NEWS.md: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/R/ExploreModelMatrix: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/R/ExploreModelMatrix.rdx: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/R/ExploreModelMatrix.rdb: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/R: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta/vignette.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta/links.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta/features.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta/nsInfo.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta/package.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta/hsearch.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta/Rd.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/Meta: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/NAMESPACE: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/html/R.css: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/html/00Index.html: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/html: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/www/emm_logo.png: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/www/ExploreModelMatrix.jpg: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/www: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/DESCRIPTION: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/INDEX: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc/index.html: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc/EMMdeploy.html: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc/EMMdeploy.R: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc/ExploreModelMatrix.R: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc/ExploreModelMatrix.Rmd: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc/EMMdeploy.Rmd: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc/ExploreModelMatrix.html: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/doc: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/help/AnIndex: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/help/aliases.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/help/paths.rds: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/help/ExploreModelMatrix.rdx: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/help/ExploreModelMatrix.rdb: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix/help: Operation not permitted
chown: ExploreModelMatrix.buildbin-libdir/ExploreModelMatrix: Operation not permitted