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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 651/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EpiTxDb 1.17.0  (landing page)
Felix G.M. Ernst
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/EpiTxDb
git_branch: devel
git_last_commit: 6310866
git_last_commit_date: 2024-04-30 11:21:48 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

INSTALL results for EpiTxDb on palomino6

To the developers/maintainers of the EpiTxDb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EpiTxDb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EpiTxDb
Version: 1.17.0
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL EpiTxDb
StartedAt: 2024-07-15 15:42:52 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 15:43:53 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 61.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL EpiTxDb
###
##############################################################################
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* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'EpiTxDb' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackage' by 'txdbmaker::makeTxDbPackage' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCFeatureDbTables' by 'txdbmaker::supportedUCSCFeatureDbTables' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromGFF' by 'txdbmaker::makeTxDbFromGFF' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackageFromBiomart' by 'txdbmaker::makeTxDbPackageFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedMiRBaseBuildValues' by 'txdbmaker::supportedMiRBaseBuildValues' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCFeatureDbTracks' by 'txdbmaker::supportedUCSCFeatureDbTracks' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::browseUCSCtrack' by 'txdbmaker::browseUCSCtrack' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::getChromInfoFromBiomart' by 'txdbmaker::getChromInfoFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromGRanges' by 'txdbmaker::makeTxDbFromGRanges' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCtables' by 'txdbmaker::supportedUCSCtables' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromBiomart' by 'txdbmaker::makeTxDbFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::UCSCFeatureDbTableSchema' by 'txdbmaker::UCSCFeatureDbTableSchema' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromEnsembl' by 'txdbmaker::makeTxDbFromEnsembl' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDb' by 'txdbmaker::makeTxDb' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeFDbPackageFromUCSC' by 'txdbmaker::makeFDbPackageFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromUCSC' by 'txdbmaker::makeTxDbFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackageFromUCSC' by 'txdbmaker::makeTxDbPackageFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makePackageName' by 'txdbmaker::makePackageName' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeFeatureDbFromUCSC' by 'txdbmaker::makeFeatureDbFromUCSC' when loading 'EpiTxDb'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackage' by 'txdbmaker::makeTxDbPackage' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCFeatureDbTables' by 'txdbmaker::supportedUCSCFeatureDbTables' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromGFF' by 'txdbmaker::makeTxDbFromGFF' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackageFromBiomart' by 'txdbmaker::makeTxDbPackageFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedMiRBaseBuildValues' by 'txdbmaker::supportedMiRBaseBuildValues' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCFeatureDbTracks' by 'txdbmaker::supportedUCSCFeatureDbTracks' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::browseUCSCtrack' by 'txdbmaker::browseUCSCtrack' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::getChromInfoFromBiomart' by 'txdbmaker::getChromInfoFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromGRanges' by 'txdbmaker::makeTxDbFromGRanges' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCtables' by 'txdbmaker::supportedUCSCtables' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromBiomart' by 'txdbmaker::makeTxDbFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::UCSCFeatureDbTableSchema' by 'txdbmaker::UCSCFeatureDbTableSchema' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromEnsembl' by 'txdbmaker::makeTxDbFromEnsembl' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDb' by 'txdbmaker::makeTxDb' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeFDbPackageFromUCSC' by 'txdbmaker::makeFDbPackageFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromUCSC' by 'txdbmaker::makeTxDbFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackageFromUCSC' by 'txdbmaker::makeTxDbPackageFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makePackageName' by 'txdbmaker::makePackageName' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeFeatureDbFromUCSC' by 'txdbmaker::makeFeatureDbFromUCSC' when loading 'EpiTxDb'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackage' by 'txdbmaker::makeTxDbPackage' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCFeatureDbTables' by 'txdbmaker::supportedUCSCFeatureDbTables' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromGFF' by 'txdbmaker::makeTxDbFromGFF' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackageFromBiomart' by 'txdbmaker::makeTxDbPackageFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedMiRBaseBuildValues' by 'txdbmaker::supportedMiRBaseBuildValues' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCFeatureDbTracks' by 'txdbmaker::supportedUCSCFeatureDbTracks' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::browseUCSCtrack' by 'txdbmaker::browseUCSCtrack' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::getChromInfoFromBiomart' by 'txdbmaker::getChromInfoFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromGRanges' by 'txdbmaker::makeTxDbFromGRanges' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::supportedUCSCtables' by 'txdbmaker::supportedUCSCtables' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromBiomart' by 'txdbmaker::makeTxDbFromBiomart' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::UCSCFeatureDbTableSchema' by 'txdbmaker::UCSCFeatureDbTableSchema' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromEnsembl' by 'txdbmaker::makeTxDbFromEnsembl' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDb' by 'txdbmaker::makeTxDb' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeFDbPackageFromUCSC' by 'txdbmaker::makeFDbPackageFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbFromUCSC' by 'txdbmaker::makeTxDbFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeTxDbPackageFromUCSC' by 'txdbmaker::makeTxDbPackageFromUCSC' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makePackageName' by 'txdbmaker::makePackageName' when loading 'EpiTxDb'
Warning: replacing previous import 'GenomicFeatures::makeFeatureDbFromUCSC' by 'txdbmaker::makeFeatureDbFromUCSC' when loading 'EpiTxDb'
** testing if installed package keeps a record of temporary installation path
* DONE (EpiTxDb)