Multiple platform build/check report for BioC 3.20 - BUILD results for DeepPINCS on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4358
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DeepPINCS on palomino8

To the developers/maintainers of the DeepPINCS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepPINCS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DeepPINCS

Version: 1.14.0

Command: chmod a+r DeepPINCS -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepPINCS

StartedAt: 2025-01-02 18:26:18 -0500 (Thu, 02 Jan 2025)

EndedAt: 2025-01-02 18:28:33 -0500 (Thu, 02 Jan 2025)

EllapsedTime: 135.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r DeepPINCS -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepPINCS
###
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* checking for file 'DeepPINCS/DESCRIPTION' ... OK
* preparing 'DeepPINCS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DeepPINCS.Rmd' using rmarkdown
2025-01-02 18:26:56.843232: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2025-01-02 18:27:09.701662: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2025-01-02 18:27:53.370460: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.

Quitting from lines 82-108 [unnamed-chunk-3] (DeepPINCS.Rmd)
Error: processing vignette 'DeepPINCS.Rmd' failed with diagnostics:
ValueError: For a `build()` method with more than one argument, all arguments should have a `_shape` suffix and match an argument from `call()`. E.g. `build(self, foo_shape, bar_shape)`  For layer 'MultiLinear', Received `build()` argument `self`, which does not end in `_shape`.
Run `reticulate::py_last_error()` for details.
--- failed re-building 'DeepPINCS.Rmd'

SUMMARY: processing the following file failed:
  'DeepPINCS.Rmd'

Error: Vignette re-building failed.
Execution halted