Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-08-21 11:39 -0400 (Thu, 21 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4604 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4545 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 527/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DECIPHER 3.4.0 (landing page) Erik Wright
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the DECIPHER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DECIPHER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DECIPHER |
Version: 3.4.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DECIPHER_3.4.0.tar.gz |
StartedAt: 2025-08-19 03:20:23 -0400 (Tue, 19 Aug 2025) |
EndedAt: 2025-08-19 03:56:13 -0400 (Tue, 19 Aug 2025) |
EllapsedTime: 2149.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DECIPHER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DECIPHER_3.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/DECIPHER.Rcheck’ * using R version 4.5.1 RC (2025-06-05 r88288) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DECIPHER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DECIPHER’ version ‘3.4.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DECIPHER’ can be installed ... OK * used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... INFO installed size is 12.9Mb sub-directories of 1Mb or more: R 1.4Mb data 7.5Mb extdata 2.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE AlignSeqs: no visible binding for global variable ‘deltaGrulesRNA’ DesignSignatures: no visible binding for global variable ‘deltaHrules’ FindGenes: no visible binding for global variable ‘deltaHrulesRNA’ FindNonCoding: no visible binding for global variable ‘deltaHrulesRNA’ LearnNonCoding: no visible binding for global variable ‘deltaHrulesRNA’ PredictDBN: no visible binding for global variable ‘deltaGrulesRNA’ Treeline: multiple local function definitions for ‘.NNI’ with different formal arguments Treeline: multiple local function definitions for ‘.minimize’ with different formal arguments Undefined global functions or variables: deltaGrulesRNA deltaHrules deltaHrulesRNA * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed AlignSeqs 463.743 6.122 553.946 LearnNonCoding 171.640 5.062 189.278 Treeline 94.079 2.185 101.724 FindNonCoding 84.706 4.625 93.704 FindGenes 59.969 1.287 64.655 ExtractGenes 59.293 1.239 63.624 Genes-class 58.612 1.508 63.523 BrowseSeqs 56.894 0.807 67.214 WriteGenes 55.246 2.043 71.074 InferRecombination 53.353 0.494 56.871 InferSelection 51.032 0.486 54.841 DistanceMatrix 42.952 1.264 51.803 CorrectFrameshifts 36.116 1.409 42.266 StaggerAlignment 27.123 0.882 30.360 DetectRepeats 26.301 0.164 34.316 AlignTranslation 24.894 0.355 30.013 InferDemography 22.473 0.182 24.029 TrimDNA 15.737 2.038 18.778 Taxa-class 16.288 0.502 17.653 IdTaxa 15.142 0.430 16.438 Clusterize 14.381 0.874 17.276 LearnTaxa 9.427 2.052 13.443 ScoreAlignment 11.064 0.255 12.588 Array2Matrix 9.460 0.068 11.152 DesignArray 9.253 0.038 10.245 TileSeqs 9.022 0.042 9.526 MapCharacters 8.343 0.422 10.779 AlignPairs 7.728 0.179 9.069 AlignSynteny 5.759 0.055 6.771 TrainingSet_16S 5.221 0.075 5.658 Cophenetic 5.023 0.043 5.748 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.21-bioc/meat/DECIPHER.Rcheck/00check.log’ for details.
DECIPHER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DECIPHER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘DECIPHER’ ... ** this is package ‘DECIPHER’ version ‘3.4.0’ ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c AlignProfiles.c -o AlignProfiles.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c AssignIndels.c -o AssignIndels.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CalculateDeltaG.c -o CalculateDeltaG.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CalculateFISH.c -o CalculateFISH.o CalculateFISH.c:26:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -11.5, -7.8, -7, -8.3, ^~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:27:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -10.4, -12.8, -16.3, -9.1, ^~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:28:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.6, -8, -9.3, -5.9, ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:29:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.8, -5.5, -9, -7.8 ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:32:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -36.4, -21.6, -19.7, -23.9, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:33:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -28.4, -31.9, -47.1, -23.5, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:34:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.9, -17.1, -23.2, -12.3, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:35:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -23.2, -13.5, -26.1, -21.9 ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:38:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.9, -8.4, -7.8, -7.2, ^~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:39:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.5, -8, -10.6, -7.8, ^~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:40:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.2, -9.8, -8, -8.4, ^~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:41:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.2, -8.2, -8.5, -7.9 ^~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:44:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2, -22.4, -21, -20.4, ^~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:45:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.7, -19.9, -27.2, -21, ^~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:46:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2, -24.4, -19.9, -22.4, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:47:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -21.3, -22.2, -22.7, -22.2 ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:50:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -6.6, -10.17, -7.65, -5.76, ^~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:51:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -10.56, -12.21, -7.95, -7.65, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:52:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -13.37, -14.21, -12.21, -10.17, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:53:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -8.11, -13.37, -10.56, -6.6 ^~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:56:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -18.38, -26.03, -19.18, -15.67, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:57:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -28.25, -30.02, -19.18, -19.18, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:58:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -35.68, -34.85, -30.02, -26.03, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } CalculateFISH.c:59:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.59, -35.68, -28.25, -18.38 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } 24 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ChainSegments.c -o ChainSegments.o ChainSegments.c:666:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Cluster.c -o Cluster.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ClusterME.c -o ClusterME.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ClusterML.c -o ClusterML.o ClusterML.c:1887:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ClusterMP.c -o ClusterMP.o ClusterMP.c:112:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Compositions.c -o Compositions.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Compression.c -o Compression.o Compression.c:521:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Compression.c:1408:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Compression.c:1706:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ConsensusSequence.c -o ConsensusSequence.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DesignProbes.c -o DesignProbes.o DesignProbes.c:72:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -0.816507461,-2.5401714,-1.647430026,-1.184658548 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:73:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-1.854740485,-2.479102613,-2.826248182,-1.647430026 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:74:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-2.48761723,-4.694133177,-2.479102613,-2.5401714 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:75:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.495794417,-2.48761723,-1.854740485,-0.816507461 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:79:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -0.141370102,-0.439805276,-0.285236035,-0.205111781 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:80:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.321129768,-0.429231826,-0.48933661,-0.285236035 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.430706047,-0.812742218,-0.429231826,-0.439805276 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:82:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-0.085841845,-0.430706047,-0.321129768,-0.141370102 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:86:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { } DesignProbes.c:87:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.545032445,1.254355018,1.491691514,1.329138183 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:88:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.150635633,0.582415494,1.075877275,1.187937642 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:89:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.203555051,1.001540513,0.864287715,0.717125848 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:86:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { DesignProbes.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.630005348,0.18553379,0.730763505,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:93:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.856582783,-0.143236405,0.716721488,0.603652831 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:94:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.851622883,0.653168672,0.676545316,1.187937642 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:95:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.630005348,0.18553379,0.730763505,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:96:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.231861002,0.746214538,1.087821916,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:97:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.822113278,1.270687029,1.336192565,1.364584949 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:98:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:99:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.443665704,1.385046493,1.256013166,1.329138183 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:100:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:96:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.231861002,0.746214538,1.087821916,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:101:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.478009492,0.882097231,1.20450984,1.061002478 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:102:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.496720812,0.846496194,0.967868114,0.989140748 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:103:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.766581547,-0.024857805,0.50754303,0.709272397 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:104:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:105:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:101:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.478009492,0.882097231,1.20450984,1.061002478 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:106:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:107:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:108:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:109:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.76,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:106:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.75,0.65,0.69,0.78 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:86:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] 0,0,0,0 ^~~~~~~ { DesignProbes.c:111:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:112:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.295827995,0.84547091,0.91019099,1.256013166 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:113:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.755889609,0.241428373,0.396379912,0.676545316 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:114:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.99945386,0.740323132,0.435659206,0.864287715 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:115:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:111:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:116:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.843147406,0.101248351,0.49063599,0.50754303 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:117:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:118:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.0651638,0.249934344,0.699352949,0.716721488 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:119:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.871921533,0.59458138,0.396379912,1.075877275 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:120:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:116:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.843147406,0.101248351,0.49063599,0.50754303 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:121:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.07531714,0.318907854,0.653287717,0.967868114 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:122:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.099899195,0.730184613,0.661798984,1.336192565 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:123:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:124:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.45897431,1.318532145,0.91019099,1.491691514 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:125:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:121:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.07531714,0.318907854,0.653287717,0.967868114 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:126:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.242135174,0.894838095,1.108555445,1.20450984 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:127:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.911428974,0.524430101,0.653287717,1.087821916 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:128:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.503209827,0.274849491,0.49063599,0.730763505 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:129:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:130:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:126:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.242135174,0.894838095,1.108555445,1.20450984 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:131:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:132:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:133:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.56,0.49,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:134:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:131:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.65,0.55,0.48,0.69 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:111:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:136:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:137:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.100661785,0.969784756,1.318532145,1.385046493 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:138:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.565895968,-0.060347902,0.59458138,0.653168672 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:139:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.782168488,0.788161238,0.740323132,1.001540513 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:140:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:136:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:141:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.468913405,-0.469855984,0.274849491,-0.024857805 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:142:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:143:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.258195131,-0.70438632,0.249934344,-0.143236405 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:144:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.502914193,-0.060347902,0.241428373,0.582415494 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:145:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:141:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.468913405,-0.469855984,0.274849491,-0.024857805 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:146:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.584083861,0.258975454,0.524430101,0.846496194 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:147:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.968040559,0.797499702,0.730184613,1.270687029 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:148:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:149:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.081040749,0.969784756,0.84547091,1.254355018 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:150:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:146:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.584083861,0.258975454,0.524430101,0.846496194 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:151:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.048553951,0.728354541,0.894838095,0.882097231 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:152:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.88611252,0.258975454,0.318907854,0.746214538 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:153:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.239520858,-0.469855984,0.101248351,0.18553379 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:154:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:155:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:151:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.048553951,0.728354541,0.894838095,0.882097231 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:156:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:157:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:158:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.47,0.56,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:159:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:156:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.68,0.46,0.55,0.65 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:136:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:161:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:162:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.566899704,1.081040749,1.45897431,1.443665704 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:163:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.976725675,0.502914193,0.871921533,0.851622883 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:164:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.482046826,0.782168488,0.99945386,1.203555051 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:165:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.76 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:161:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:166:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.239520858,0.503209827,0.766581547 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:167:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:168:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.141098246,0.258195131,1.0651638,0.856582783 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:169:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.976725675,0.565895968,0.755889609,1.150635633 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:170:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:166:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.239520858,0.503209827,0.766581547 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:171:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.88611252,0.911428974,1.496720812 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:172:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.68169282,0.968040559,1.099899195,1.822113278 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:173:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:174:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.566899704,1.100661785,1.295827995,1.545032445 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:175:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:171:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.88611252,0.911428974,1.496720812 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:176:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.35948517,1.048553951,1.242135174,1.478009492 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:177:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.125403302,0.584083861,1.07531714,1.231861002 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:178:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.798628781,0.468913405,0.843147406,0.630005348 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:179:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:180:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:176:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,1.35948517,1.048553951,1.242135174,1.478009492 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ { DesignProbes.c:181:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:182:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:183:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:184:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { } DesignProbes.c:185:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { } DesignProbes.c:181:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0.85,0.68,0.65,0.75 ^~~~~~~~~~~~~~~~~~~ { DesignProbes.c:161:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,0,0,0,0 ^~~~~~~ { DesignProbes.c:59:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 133 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Diff.c -o Diff.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DistanceMatrix.c -o DistanceMatrix.o DistanceMatrix.c:522:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ DistanceMatrix.c:1118:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c EnumerateSequence.c -o EnumerateSequence.o EnumerateSequence.c:298:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ EnumerateSequence.c:871:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ExpandAmbiguities.c -o ExpandAmbiguities.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FindFrameshifts.c -o FindFrameshifts.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GeneFinding.c -o GeneFinding.o GeneFinding.c:3261:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ GeneFinding.c:3338:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ GeneFinding.c:3395:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GetPools.c -o GetPools.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Import.c -o Import.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c InformationContent.c -o InformationContent.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c IntDist.c -o IntDist.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ManipulateXStringSet.c -o ManipulateXStringSet.o ManipulateXStringSet.c:55:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:692:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:822:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:925:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ ManipulateXStringSet.c:1019:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 5 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MeltPolymer.c -o MeltPolymer.o MeltPolymer.c:80:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -7.9,-8.4,-7.8,-7.2 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-8.5,-8.0,-10.6,-7.8 ^~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:82:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-8.2,-9.8,-8.0,-8.4 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:83:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-7.2,-8.2,-8.5,-7.9 ^~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:89:3: warning: suggest braces around initialization of subobject [-Wmissing-braces] -22.2,-22.4,-21.0,-20.4 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-22.7,-19.9,-27.2,-21.0 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-22.2,-24.4,-19.9,-22.4 ^~~~~~~~~~~~~~~~~~~~~~~ { } MeltPolymer.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces] ,-21.3,-22.2,-22.7,-22.2 ^~~~~~~~~~~~~~~~~~~~~~~ { } 8 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MovingAverage.c -o MovingAverage.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c NNLS.c -o NNLS.o NNLS.c:50:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Order.c -o Order.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PairwiseAlignment.c -o PairwiseAlignment.o PairwiseAlignment.c:188:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ PairwiseAlignment.c:1034:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PopulationGenetics.c -o PopulationGenetics.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PredictDBN.c -o PredictDBN.o PredictDBN.c:160:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PredictHEC.c -o PredictHEC.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_init_decipher.c -o R_init_decipher.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Search.c -o Search.o Search.c:106:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TerminalMismatch.c -o TerminalMismatch.o TerminalMismatch.c:41:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Translate.c -o Translate.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Utils.c -o Utils.o Utils.c:230:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ Utils.c:343:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c VectorSums.c -o VectorSums.o VectorSums.c:83:6: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = asInteger(nThreads); ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Biostrings/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/XVector/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c XVector_stubs.c -o XVector_stubs.o clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o DECIPHER.so AlignProfiles.o AssignIndels.o Biostrings_stubs.o CalculateDeltaG.o CalculateFISH.o ChainSegments.o Cluster.o ClusterME.o ClusterML.o ClusterMP.o Compositions.o Compression.o ConsensusSequence.o DesignProbes.o Diff.o DistanceMatrix.o EnumerateSequence.o ExpandAmbiguities.o FindFrameshifts.o GeneFinding.o GetPools.o Import.o InformationContent.o IntDist.o ManipulateXStringSet.o MeltPolymer.o MovingAverage.o NNLS.o Order.o PairwiseAlignment.o PopulationGenetics.o PredictDBN.o PredictHEC.o R_init_decipher.o S4Vectors_stubs.o Search.o TerminalMismatch.o Translate.o Utils.o VectorSums.o XVector_stubs.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-DECIPHER/00new/DECIPHER/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DECIPHER)
DECIPHER.Rcheck/DECIPHER-Ex.timings
name | user | system | elapsed | |
AA_REDUCED | 0.102 | 0.017 | 0.149 | |
Add2DB | 1.435 | 0.148 | 1.810 | |
AdjustAlignment | 0.431 | 0.028 | 0.531 | |
AlignDB | 2.408 | 0.066 | 2.771 | |
AlignPairs | 7.728 | 0.179 | 9.069 | |
AlignProfiles | 1.687 | 0.059 | 1.946 | |
AlignSeqs | 463.743 | 6.122 | 553.946 | |
AlignSynteny | 5.759 | 0.055 | 6.771 | |
AlignTranslation | 24.894 | 0.355 | 30.013 | |
AmplifyDNA | 0.004 | 0.005 | 0.010 | |
Array2Matrix | 9.460 | 0.068 | 11.152 | |
BLOSUM | 0.024 | 0.010 | 0.040 | |
BrowseDB | 0.083 | 0.005 | 0.099 | |
BrowseSeqs | 56.894 | 0.807 | 67.214 | |
CalculateEfficiencyArray | 0.026 | 0.007 | 0.047 | |
CalculateEfficiencyFISH | 0.009 | 0.001 | 0.012 | |
CalculateEfficiencyPCR | 0.009 | 0.000 | 0.011 | |
Clusterize | 14.381 | 0.874 | 17.276 | |
Codec | 1.254 | 0.026 | 1.406 | |
ConsensusSequence | 0.385 | 0.023 | 0.442 | |
Cophenetic | 5.023 | 0.043 | 5.748 | |
CorrectFrameshifts | 36.116 | 1.409 | 42.266 | |
CreateChimeras | 1.743 | 0.017 | 2.024 | |
DB2Seqs | 0.060 | 0.025 | 0.097 | |
DesignArray | 9.253 | 0.038 | 10.245 | |
DesignPrimers | 0.020 | 0.002 | 0.024 | |
DesignProbes | 0.019 | 0.002 | 0.024 | |
DesignSignatures | 0.022 | 0.004 | 0.027 | |
DetectRepeats | 26.301 | 0.164 | 34.316 | |
DigestDNA | 0.306 | 0.015 | 0.645 | |
Disambiguate | 0.112 | 0.006 | 0.232 | |
DistanceMatrix | 42.952 | 1.264 | 51.803 | |
ExtractGenes | 59.293 | 1.239 | 63.624 | |
FindChimeras | 0.147 | 0.007 | 0.163 | |
FindGenes | 59.969 | 1.287 | 64.655 | |
FindNonCoding | 84.706 | 4.625 | 93.704 | |
FindSynteny | 3.409 | 0.054 | 3.476 | |
FormGroups | 0.131 | 0.009 | 0.140 | |
Genes-class | 58.612 | 1.508 | 63.523 | |
HEC_MI | 0.297 | 0.023 | 0.388 | |
IdConsensus | 0.910 | 0.079 | 1.190 | |
IdLengths | 0.061 | 0.005 | 0.082 | |
IdTaxa | 15.142 | 0.430 | 16.438 | |
IdentifyByRank | 0.073 | 0.006 | 0.083 | |
IndexSeqs | 1.564 | 0.011 | 1.660 | |
InferDemography | 22.473 | 0.182 | 24.029 | |
InferRecombination | 53.353 | 0.494 | 56.871 | |
InferSelection | 51.032 | 0.486 | 54.841 | |
InvertedIndex-class | 0.877 | 0.006 | 1.128 | |
LearnNonCoding | 171.640 | 5.062 | 189.278 | |
LearnTaxa | 9.427 | 2.052 | 13.443 | |
MIQS | 0.064 | 0.013 | 0.098 | |
MMLSUM | 0.012 | 0.018 | 0.037 | |
MODELS | 0.003 | 0.001 | 0.004 | |
MapCharacters | 8.343 | 0.422 | 10.779 | |
MaskAlignment | 1.019 | 0.038 | 1.299 | |
MeltDNA | 0.122 | 0.007 | 0.157 | |
NNLS | 0.005 | 0.002 | 0.008 | |
NonCoding-class | 0.089 | 0.026 | 0.138 | |
NonCodingRNA | 0.138 | 0.048 | 0.229 | |
OrientNucleotides | 0.804 | 0.013 | 0.980 | |
PAM | 0.012 | 0.007 | 0.020 | |
PFASUM | 0.014 | 0.007 | 0.024 | |
PredictDBN | 0.015 | 0.003 | 0.022 | |
PredictHEC | 0.535 | 0.020 | 0.608 | |
RESTRICTION_ENZYMES | 0.005 | 0.010 | 0.017 | |
ReadDendrogram | 0.038 | 0.004 | 0.045 | |
RemoveGaps | 0.026 | 0.001 | 0.028 | |
ScoreAlignment | 11.064 | 0.255 | 12.588 | |
SearchDB | 0.090 | 0.008 | 0.104 | |
SearchIndex | 2.182 | 0.050 | 2.533 | |
Seqs2DB | 0.201 | 0.005 | 0.248 | |
StaggerAlignment | 27.123 | 0.882 | 30.360 | |
Synteny-class | 4.406 | 0.052 | 4.690 | |
Taxa-class | 16.288 | 0.502 | 17.653 | |
TerminalChar | 0.013 | 0.003 | 0.018 | |
TileSeqs | 9.022 | 0.042 | 9.526 | |
TrainingSet_16S | 5.221 | 0.075 | 5.658 | |
Treeline | 94.079 | 2.185 | 101.724 | |
TrimDNA | 15.737 | 2.038 | 18.778 | |
WriteDendrogram | 0.008 | 0.002 | 0.010 | |
WriteGenes | 55.246 | 2.043 | 71.074 | |
deltaGrules | 0.014 | 0.014 | 0.030 | |
deltaGrulesRNA | 0.024 | 0.014 | 0.042 | |
deltaHrules | 0.024 | 0.015 | 0.046 | |
deltaHrulesRNA | 0.023 | 0.014 | 0.042 | |
deltaSrules | 0.093 | 0.010 | 0.114 | |
deltaSrulesRNA | 0.023 | 0.013 | 0.039 | |