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This page was generated on 2025-10-16 11:40 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 330/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChemmineOB 1.46.0  (landing page)
Thomas Girke
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/ChemmineOB
git_branch: RELEASE_3_21
git_last_commit: 3c9cfd8
git_last_commit_date: 2025-04-15 10:26:03 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson1macOS 13.7.5 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped

INSTALL results for ChemmineOB on kjohnson1

To the developers/maintainers of the ChemmineOB package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineOB.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ChemmineOB
Version: 1.46.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ChemmineOB
StartedAt: 2025-10-13 15:32:23 -0400 (Mon, 13 Oct 2025)
EndedAt: 2025-10-13 15:32:32 -0400 (Mon, 13 Oct 2025)
EllapsedTime: 9.4 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ChemmineOB
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘ChemmineOB’ ...
** this is package ‘ChemmineOB’ version ‘1.46.0’
** using staged installation
checking for pkg-config... /opt/homebrew/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for OPENBABEL... no
checking for OPENBABEL... no
checking for gcc... clang -arch arm64 -std=gnu2x
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 -std=gnu2x accepts -g... yes
checking for clang -arch arm64 -std=gnu2x option to accept ISO C89... unsupported
checking how to run the C preprocessor... clang -arch arm64 -std=gnu2x -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/include/openbabel3  -I/usr/include/eigen3  -DUSE_BOOST -DHAVE_EIGEN -D_LIBCPP_ENABLE_CXX17_REMOVED_UNARY_BINARY_FUNCTION  -I/usr/local/include/eigen3 -I/usr/local/include/openbabel3    -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/zlibbioc/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp:1569:10: fatal error: 'openbabel/obutil.h' file not found
#include <openbabel/obutil.h>
         ^~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [ChemmineOB.o] Error 1
ERROR: compilation failed for package ‘ChemmineOB’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/ChemmineOB’