| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-29 10:14 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4694 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 350/2415 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChIPComp 1.42.0 (landing page) Li Chen
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for ChIPComp in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ChIPComp package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChIPComp.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ChIPComp |
| Version: 1.42.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPComp |
| StartedAt: 2026-04-28 17:12:12 -0400 (Tue, 28 Apr 2026) |
| EndedAt: 2026-04-28 17:12:13 -0400 (Tue, 28 Apr 2026) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPComp
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* checking for file ‘ChIPComp/DESCRIPTION’ ... OK
* preparing ‘ChIPComp’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
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* installing *source* package ‘ChIPComp’ ...
** this is package ‘ChIPComp’ version ‘1.42.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c mva.c -o mva.o
mva.c:3:10: fatal error: R_ext/PrtUtil.h: No such file or directory
3 | #include <R_ext/PrtUtil.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:190: mva.o] Error 1
ERROR: compilation failed for package ‘ChIPComp’
* removing ‘/tmp/RtmpHO6ClU/Rinstc2b6e679463d/ChIPComp’
-----------------------------------
ERROR: package installation failed