Multiple platform build/check report for BioC 3.20 - BUILD results for ChAMP on palomino6

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4677
palomino6	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4416
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4444
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4393
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4373
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ChAMP on palomino6

To the developers/maintainers of the ChAMP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChAMP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ChAMP

Version: 2.35.0

Command: chmod a+r ChAMP -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ChAMP

StartedAt: 2024-07-15 17:01:54 -0400 (Mon, 15 Jul 2024)

EndedAt: 2024-07-15 17:04:17 -0400 (Mon, 15 Jul 2024)

EllapsedTime: 143.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r ChAMP -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ChAMP
###
##############################################################################
##############################################################################


* checking for file 'ChAMP/DESCRIPTION' ... OK
* preparing 'ChAMP':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'ChAMP.Rmd' using rmarkdown
pandoc-citeproc.exe: PandocHttpError "http://www.zotero.org/styles/american-medical-association" (HttpExceptionRequest Request {
  host                 = "www.zotero.org"
  port                 = 80
  secure               = False
  requestHeaders       = []
  path                 = "/styles/american-medical-association"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (ConnectionFailure user error (Network.Socket.gai_strerror not supported: 11001)))
Error running filter C:/PROGRA~1/Pandoc/pandoc-citeproc.exe:
Filter returned error status 1
Error: processing vignette 'ChAMP.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building 'ChAMP.Rmd'

SUMMARY: processing the following file failed:
  'ChAMP.Rmd'

Error: Vignette re-building failed.
Execution halted