Multiple platform build/check report for BioC 3.20 - BUILD BIN results for COSNet on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4679
palomino4	Windows Server 2022 Datacenter	x64	4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"	4414
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4441
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4394
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for COSNet on palomino4

To the developers/maintainers of the COSNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COSNet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: COSNet

Version: 1.39.0

Command: rm -rf COSNet.buildbin-libdir && mkdir COSNet.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=COSNet.buildbin-libdir COSNet_1.39.0.tar.gz

StartedAt: 2024-06-10 13:16:46 -0400 (Mon, 10 Jun 2024)

EndedAt: 2024-06-10 13:17:19 -0400 (Mon, 10 Jun 2024)

EllapsedTime: 33.1 seconds

RetCode: 0

Status: OK

PackageFile: COSNet_1.39.0.zip

PackageFileSize: 332.2 KiB

Command output

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###
### Running command:
###
###   rm -rf COSNet.buildbin-libdir && mkdir COSNet.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=COSNet.buildbin-libdir COSNet_1.39.0.tar.gz
###
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* installing *source* package 'COSNet' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c COSNet.c -o COSNet.o
In function 'compute_c',
    inlined from 'error_minimization' at COSNet.c:456:2:
COSNet.c:207:36: warning: 'theta_best_over' may be used uninitialized [-Wmaybe-uninitialized]
  207 |                 c_values[j] = y1 - tan(theta_best)*x1;
      |                                    ^~~~~~~~~~~~~~~
COSNet.c: In function 'error_minimization':
COSNet.c:409:16: note: 'theta_best_over' was declared here
  409 |         double theta_best_over, theta_best_under=0,tmp_hmean_under, tmp_hmean_over;
      |                ^~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o COSNet.dll tmp.def COSNet.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/COSNet.buildbin-libdir/00LOCK-COSNet/00new/COSNet/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
COSNet: Cost-Sensitive algorithm for binary classification in graphs.
** testing if installed package can be loaded from final location
COSNet: Cost-Sensitive algorithm for binary classification in graphs.
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'COSNet' as COSNet_1.39.0.zip
* DONE (COSNet)