Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 275/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CARNIVAL 2.16.0 (landing page) Attila Gabor
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the CARNIVAL package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CARNIVAL.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CARNIVAL |
Version: 2.16.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:CARNIVAL.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings CARNIVAL_2.16.0.tar.gz |
StartedAt: 2024-11-19 23:53:06 -0500 (Tue, 19 Nov 2024) |
EndedAt: 2024-11-19 23:53:35 -0500 (Tue, 19 Nov 2024) |
EllapsedTime: 29.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CARNIVAL.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:CARNIVAL.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings CARNIVAL_2.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/CARNIVAL.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘CARNIVAL/DESCRIPTION’ ... OK * this is package ‘CARNIVAL’ version ‘2.16.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CARNIVAL’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE checkSolverPathInSystem: no visible global function definition for ‘searchForSolver’ convergenceTextToTable: no visible binding for global variable ‘.’ convergenceTextToTable: no visible binding for global variable ‘Gap’ convergenceTextToTable: no visible binding for global variable ‘Objective’ convergenceTextToTable: no visible binding for global variable ‘Best Bound’ convergenceTextToTable: no visible binding for global variable ‘index’ createInternalDataRepresentation: no visible global function definition for ‘buildDataVector’ createInternalDataRepresentation: no visible global function definition for ‘createVariables’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘nodes’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘nodesValue’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘solution’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘Node2Value’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘edgesUpValue’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘edgesDownValue’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘presents’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘Node1’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘Sign’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘Node2’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘Activity’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘nodesType’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘zeroActivity’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘activityUp’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘activityDown’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘UpAct’ exportIlpSolutionFromSolutionMatrix: no visible binding for global variable ‘DownAct’ getSolutionMatrixGurobi: no visible global function definition for ‘read.csv2’ parseCplexLog: no visible binding for global variable ‘.’ prepareForCarnivalRun: no visible global function definition for ‘createLpFormulation’ processSolution: no visible global function definition for ‘exportIlpSolutionResultFromXml’ sendTaskToSolver: no visible global function definition for ‘transformVariables’ solveWithCbc: no visible global function definition for ‘read.csv2’ solveWithCplex: no visible global function definition for ‘read.delim’ timeStringToTable: no visible binding for global variable ‘.’ timeStringToTable: no visible binding for global variable ‘ticks’ timeStringToTable: no visible binding for global variable ‘Solutions’ Undefined global functions or variables: . Activity Best Bound DownAct Gap Node1 Node2 Node2Value Objective Sign Solutions UpAct activityDown activityUp buildDataVector createLpFormulation createVariables edgesDownValue edgesUpValue exportIlpSolutionResultFromXml index nodes nodesType nodesValue presents read.csv2 read.delim searchForSolver solution ticks transformVariables zeroActivity Consider adding importFrom("utils", "read.csv2", "read.delim") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/CARNIVAL.Rcheck/00check.log’ for details.
CARNIVAL.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL CARNIVAL ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘CARNIVAL’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CARNIVAL)
CARNIVAL.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(CARNIVAL) > > test_check("CARNIVAL") sh: 1: NA/cplex: not found sh: 1: /tmp/RtmpySNedn/file22e1147336878a: not found Test run finished successfully. Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union The following names changed in the network: user.defined.id mapped.id 1 I*1 I_1 2 N2- N2_ 3 <N1> X_N1_ The following names changed in the network: user.defined.id mapped.id 1 *N*1 X_N_1 2 N+2 N_2 3 M1: M1_ 4 M1* M1_ The following node names maps to the same ID: user.defined.id mapped.id 3 M1: M1_ 4 M1* M1_ The following names changed in the network: user.defined.id mapped.id 1 I*1 I_1 2 N2- N2_ 3 <N1> X_N1_ The following names changed in the network: user.defined.id mapped.id 1 *N*1 X_N_1 2 N+2 N_2 3 M1: M1_ --- Start of the CARNIVAL pipeline --- 23:53:27 19.11.2024 Carnival flavour: vanilla 23:53:27 19.11.2024 Generating variables for lp problem 23:53:27 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/test5//parsedData_t23_53_27d19_11_2024n92.RData 23:53:27 19.11.2024 Generating formulation for LP problem 23:53:27 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/test5//lpFile_t23_53_27d19_11_2024n92.lp 23:53:27 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 174 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:27 19.11.2024 Done: solving LP problem. 23:53:27 19.11.2024 Getting the solution matrix 23:53:27 19.11.2024 Done: getting the solution matrix. 23:53:27 19.11.2024 Exporting solution matrix 23:53:28 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:28 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:28 19.11.2024 Carnival flavour: inverse Perturbations are not provided, all parents nodes are added as potential perturbations. 23:53:28 19.11.2024 Generating variables for lp problem 23:53:28 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/CARNIVAL.Rcheck/tests/testthat/work_lpsolve/work_lpsolve//parsedData_t23_53_28d19_11_2024n86.RData 23:53:28 19.11.2024 Generating formulation for LP problem 23:53:28 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/CARNIVAL.Rcheck/tests/testthat/work_lpsolve/work_lpsolve//lpFile_t23_53_28d19_11_2024n86.lp 23:53:28 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 142 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:28 19.11.2024 Done: solving LP problem. 23:53:28 19.11.2024 Getting the solution matrix 23:53:28 19.11.2024 Done: getting the solution matrix. 23:53:28 19.11.2024 Exporting solution matrix 23:53:28 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:28 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:28 19.11.2024 Carnival flavour: vanilla 23:53:28 19.11.2024 Generating variables for lp problem 23:53:28 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/test1///parsedData_t23_53_28d19_11_2024n28.RData 23:53:28 19.11.2024 Generating formulation for LP problem 23:53:28 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/test1///lpFile_t23_53_28d19_11_2024n28.lp 23:53:28 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 108 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:28 19.11.2024 Done: solving LP problem. 23:53:28 19.11.2024 Getting the solution matrix 23:53:28 19.11.2024 Done: getting the solution matrix. 23:53:28 19.11.2024 Exporting solution matrix 23:53:28 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:28 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:28 19.11.2024 Carnival flavour: vanilla 23:53:28 19.11.2024 Generating variables for lp problem 23:53:28 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/test2///parsedData_t23_53_28d19_11_2024n14.RData 23:53:28 19.11.2024 Generating formulation for LP problem 23:53:28 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/test2///lpFile_t23_53_28d19_11_2024n14.lp 23:53:28 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 108 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:28 19.11.2024 Done: solving LP problem. 23:53:28 19.11.2024 Getting the solution matrix 23:53:28 19.11.2024 Done: getting the solution matrix. 23:53:28 19.11.2024 Exporting solution matrix 23:53:28 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:28 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:28 19.11.2024 Carnival flavour: vanilla 23:53:28 19.11.2024 Generating variables for lp problem 23:53:28 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/test3///parsedData_t23_53_28d19_11_2024n13.RData 23:53:28 19.11.2024 Generating formulation for LP problem 23:53:28 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/test3///lpFile_t23_53_28d19_11_2024n13.lp 23:53:28 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 108 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:28 19.11.2024 Done: solving LP problem. 23:53:28 19.11.2024 Getting the solution matrix 23:53:28 19.11.2024 Done: getting the solution matrix. 23:53:28 19.11.2024 Exporting solution matrix 23:53:28 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:28 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:28 19.11.2024 Carnival flavour: vanilla 23:53:28 19.11.2024 Generating variables for lp problem 23:53:28 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/test4///parsedData_t23_53_28d19_11_2024n14.RData 23:53:28 19.11.2024 Generating formulation for LP problem 23:53:28 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/test4///lpFile_t23_53_28d19_11_2024n14.lp 23:53:28 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 121 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:28 19.11.2024 Done: solving LP problem. 23:53:28 19.11.2024 Getting the solution matrix 23:53:28 19.11.2024 Done: getting the solution matrix. 23:53:28 19.11.2024 Exporting solution matrix 23:53:28 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:28 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:28 19.11.2024 Carnival flavour: vanilla 23:53:28 19.11.2024 Generating variables for lp problem 23:53:28 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/test5//parsedData_t23_53_28d19_11_2024n71.RData 23:53:28 19.11.2024 Generating formulation for LP problem 23:53:28 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/test5//lpFile_t23_53_28d19_11_2024n71.lp 23:53:28 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 174 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:28 19.11.2024 Done: solving LP problem. 23:53:28 19.11.2024 Getting the solution matrix 23:53:28 19.11.2024 Done: getting the solution matrix. 23:53:28 19.11.2024 Exporting solution matrix 23:53:28 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:28 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:29 19.11.2024 Carnival flavour: vanilla 23:53:29 19.11.2024 Generating variables for lp problem 23:53:29 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/testweight2///parsedData_t23_53_29d19_11_2024n41.RData 23:53:29 19.11.2024 Generating formulation for LP problem 23:53:29 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/testweight2///lpFile_t23_53_29d19_11_2024n41.lp 23:53:29 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 108 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:29 19.11.2024 Done: solving LP problem. 23:53:29 19.11.2024 Getting the solution matrix 23:53:29 19.11.2024 Done: getting the solution matrix. 23:53:29 19.11.2024 Exporting solution matrix 23:53:29 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:29 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:29 19.11.2024 Carnival flavour: vanilla 23:53:29 19.11.2024 Generating variables for lp problem 23:53:29 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/testweight3///parsedData_t23_53_29d19_11_2024n91.RData 23:53:29 19.11.2024 Generating formulation for LP problem 23:53:29 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/testweight3///lpFile_t23_53_29d19_11_2024n91.lp 23:53:29 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 108 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:29 19.11.2024 Done: solving LP problem. 23:53:29 19.11.2024 Getting the solution matrix 23:53:29 19.11.2024 Done: getting the solution matrix. 23:53:29 19.11.2024 Exporting solution matrix 23:53:29 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:29 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- --- Start of the CARNIVAL pipeline --- 23:53:29 19.11.2024 Carnival flavour: vanilla 23:53:29 19.11.2024 Generating variables for lp problem 23:53:29 19.11.2024 Done: generating variables for lp problem Saving preprocessed data. Done: saving parsed data: ./test_model1/testweight4///parsedData_t23_53_29d19_11_2024n45.RData 23:53:29 19.11.2024 Generating formulation for LP problem 23:53:29 19.11.2024 Done: generating formulation for LP problem. Saving LP file Done: Saving LP file: ./test_model1/testweight4///lpFile_t23_53_29d19_11_2024n45.lp 23:53:29 19.11.2024 Solving LP problem Parsing .lp file for lpSolve Rows: 108 Columns: 1 -- Column specification -------------------------------------------------------- Delimiter: "," chr (1): X1 i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Done: parsing .lp file for lpSolve 23:53:29 19.11.2024 Done: solving LP problem. 23:53:29 19.11.2024 Getting the solution matrix 23:53:29 19.11.2024 Done: getting the solution matrix. 23:53:29 19.11.2024 Exporting solution matrix 23:53:29 19.11.2024 Done: exporting solution matrix. Cleaning intermediate files Done: cleaning 23:53:29 19.11.2024 All tasks finished. --- End of the CARNIVAL pipeline --- [ FAIL 0 | WARN 0 | SKIP 14 | PASS 135 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • !file.exists(cbcPath) is TRUE (1): 'test-set_solver_path.R:19:5' • file.exists(cbcPath) is not TRUE (4): 'test_cbc_small_models.R:78:5', 'test_cbc_small_models.R:131:5', 'test_cbc_small_models.R:185:5', 'test_cbc_small_models.R:278:5' • file.exists(cplexPath) is not TRUE (5): 'test_cplex_small_models.R:82:5', 'test_cplex_small_models.R:136:5', 'test_cplex_small_models.R:194:5', 'test_cplex_small_models.R:288:5', 'test_inverseCarnival.R:131:5' • file.exists(gurobiPath) is not TRUE (4): 'test_gurobi_small_models.R:82:5', 'test_gurobi_small_models.R:134:5', 'test_gurobi_small_models.R:188:5', 'test_gurobi_small_models.R:279:5' [ FAIL 0 | WARN 0 | SKIP 14 | PASS 135 ] > > proc.time() user system elapsed 2.744 0.209 2.942
CARNIVAL.Rcheck/CARNIVAL-Ex.timings
name | user | system | elapsed | |
checkOptionsValidity | 0 | 0 | 0 | |
defaultCbcSolveCarnivalOptions | 0 | 0 | 0 | |
defaultCplexCarnivalOptions | 0.001 | 0.003 | 0.002 | |
defaultCplexSpecificOptions | 0 | 0 | 0 | |
defaultLpSolveCarnivalOptions | 0 | 0 | 0 | |
generateLpFileCarnival | 0.002 | 0.002 | 0.005 | |
isInputValidCarnival | 0.002 | 0.000 | 0.002 | |
runCARNIVAL | 0.002 | 0.000 | 0.001 | |
runFromLpCarnival | 0.002 | 0.000 | 0.001 | |
runInverseCarnival | 0.001 | 0.000 | 0.002 | |
runVanillaCarnival | 0.001 | 0.000 | 0.002 | |
setCarnivalOptions | 0 | 0 | 0 | |
suggestedCbcSpecificOptions | 0 | 0 | 0 | |
suggestedCplexSpecificOptions | 0.000 | 0.000 | 0.001 | |