Multiple platform build/check report for BioC 3.21 - BUILD results for BiocHail on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4833
merida1	macOS 12.7.6 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4614
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4555
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4586
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BiocHail on nebbiolo1

To the developers/maintainers of the BiocHail package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocHail.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocHail

Version: 1.8.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocHail

StartedAt: 2025-10-15 16:25:38 -0400 (Wed, 15 Oct 2025)

EndedAt: 2025-10-15 16:25:56 -0400 (Wed, 15 Oct 2025)

EllapsedTime: 18.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocHail
###
##############################################################################
##############################################################################


* checking for file ‘BiocHail/DESCRIPTION’ ... OK
* preparing ‘BiocHail’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gwas_tut.Rmd’ using rmarkdown
--- finished re-building ‘gwas_tut.Rmd’

--- re-building ‘large_t2t.Rmd’ using rmarkdown

Quitting from large_t2t.Rmd:68-79 [do17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.activate_fallback()`:
! ImportError: /usr/lib/x86_64-linux-gnu/libcrypto.so.3: version `OPENSSL_3.3.0' not found (required by /home/biocbuild/.cache/R/basilisk/1.20.0/BiocHail/1.8.0/bsklenv/lib/python3.12/lib-dynload/_ssl.cpython-312-x86_64-linux-gnu.so)
Run `reticulate::py_last_error()` for details.
---
Backtrace:
    ▆
 1. └─BiocHail::hail_init()
 2.   └─basilisk::basiliskStart(bsklenv, testload = "hail")
 3.     └─basilisk:::.activate_fallback(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'large_t2t.Rmd' failed with diagnostics:
ImportError: /usr/lib/x86_64-linux-gnu/libcrypto.so.3: version `OPENSSL_3.3.0' not found (required by /home/biocbuild/.cache/R/basilisk/1.20.0/BiocHail/1.8.0/bsklenv/lib/python3.12/lib-dynload/_ssl.cpython-312-x86_64-linux-gnu.so)
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘large_t2t.Rmd’

--- re-building ‘ukbb.Rmd’ using rmarkdown
--- finished re-building ‘ukbb.Rmd’

SUMMARY: processing the following file failed:
  ‘large_t2t.Rmd’

Error: Vignette re-building failed.
Execution halted