##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocHail
###
##############################################################################
##############################################################################


* checking for file ‘BiocHail/DESCRIPTION’ ... OK
* preparing ‘BiocHail’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gwas_tut.Rmd’ using rmarkdown
--- finished re-building ‘gwas_tut.Rmd’

--- re-building ‘large_t2t.Rmd’ using rmarkdown
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.18.0/BiocHail/1.6.0/bsklenv

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h68df207_7 
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.8.30-hcefe29a_0 
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.43-h80caac9_2 
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5 
  libgcc             conda-forge/linux-aarch64::libgcc-14.2.0-he277a41_1 
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-14.2.0-he9431aa_1 
  libgomp            conda-forge/linux-aarch64::libgomp-14.2.0-he277a41_1 
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0 
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.47.0-hc4a20ef_1 
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0 
  libxcrypt          conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1 
  libzlib            conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2 
  ncurses            conda-forge/linux-aarch64::ncurses-6.5-hcccb83c_1 
  openssl            conda-forge/linux-aarch64::openssl-3.4.0-h86ecc28_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_0 
  python             conda-forge/linux-aarch64::python-3.10.14-hbbe8eec_0_cpython 
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1 
  setuptools         conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0 
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0 
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.9.2

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.9.2

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.18.0/BiocHail/1.6.0/bsklenv

  added / updated specs:
    - pandas=1.3.5
    - python=3.10.14


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-aarch64::libblas-3.9.0-25_linuxaarch64_openblas 
  libcblas           conda-forge/linux-aarch64::libcblas-3.9.0-25_linuxaarch64_openblas 
  libgfortran        conda-forge/linux-aarch64::libgfortran-14.2.0-he9431aa_1 
  libgfortran5       conda-forge/linux-aarch64::libgfortran5-14.2.0-hb6113d0_1 
  liblapack          conda-forge/linux-aarch64::liblapack-3.9.0-25_linuxaarch64_openblas 
  libopenblas        conda-forge/linux-aarch64::libopenblas-0.3.28-pthreads_h9d3fd7e_1 
  libstdcxx          conda-forge/linux-aarch64::libstdcxx-14.2.0-h3f4de04_1 
  libstdcxx-ng       conda-forge/linux-aarch64::libstdcxx-ng-14.2.0-hf1166c9_1 
  numpy              conda-forge/linux-aarch64::numpy-1.26.4-py310hcbab775_0 
  pandas             conda-forge/linux-aarch64::pandas-1.3.5-py310h713c908_0 
  python-dateutil    conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_0 
  python_abi         conda-forge/linux-aarch64::python_abi-3.10-5_cp310 
  pytz               conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 

The following packages will be SUPERSEDED by a higher-priority channel:

  setuptools         conda-forge/noarch::setuptools-75.5.0~ --> conda-forge/linux-aarch64::setuptools-59.8.0-py310h4c7bcd0_1 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting hail==0.2.108
  Using cached hail-0.2.108-py3-none-any.whl.metadata (6.0 kB)
WARNING: Ignoring version 0.2.108 of hail since it has invalid metadata:
Requested hail==0.2.108 from https://files.pythonhosted.org/packages/e0/46/904e5c5cc6981388af95ad482663fd9128a3a790730a2fe5ad09bc8474df/hail-0.2.108-py3-none-any.whl has invalid metadata: .* suffix can only be used with `==` or `!=` operators
    google-cloud-storage (>=1.25.*)
                          ~~~~~~~^
Please use pip<24.1 if you need to use this version.
ERROR: Ignored the following yanked versions: 0.2.87, 0.2.121, 0.2.125
ERROR: Could not find a version that satisfies the requirement hail==0.2.108 (from versions: 0.2, 0.2.1, 0.2.2, 0.2.3, 0.2.4, 0.2.5, 0.2.6, 0.2.7, 0.2.8, 0.2.9, 0.2.10, 0.2.11, 0.2.12, 0.2.13, 0.2.14, 0.2.15, 0.2.16, 0.2.17, 0.2.18, 0.2.19, 0.2.20, 0.2.21, 0.2.22, 0.2.23, 0.2.24, 0.2.25, 0.2.26, 0.2.27, 0.2.28, 0.2.29, 0.2.30, 0.2.31, 0.2.32, 0.2.33, 0.2.34, 0.2.35, 0.2.36, 0.2.37, 0.2.38, 0.2.39, 0.2.40, 0.2.41, 0.2.42, 0.2.43, 0.2.44, 0.2.45, 0.2.46, 0.2.47, 0.2.48, 0.2.49, 0.2.50, 0.2.51, 0.2.52, 0.2.53, 0.2.54, 0.2.55, 0.2.56, 0.2.57, 0.2.58, 0.2.59, 0.2.60, 0.2.61, 0.2.62, 0.2.63, 0.2.64, 0.2.65, 0.2.66, 0.2.67, 0.2.68, 0.2.69, 0.2.70, 0.2.71, 0.2.72, 0.2.73, 0.2.74, 0.2.75, 0.2.76, 0.2.77, 0.2.78, 0.2.79, 0.2.80, 0.2.81, 0.2.82, 0.2.83, 0.2.84, 0.2.85, 0.2.86, 0.2.88, 0.2.89, 0.2.90, 0.2.91, 0.2.92, 0.2.93, 0.2.94, 0.2.95, 0.2.96, 0.2.97, 0.2.98, 0.2.99, 0.2.100, 0.2.101, 0.2.102, 0.2.103, 0.2.104, 0.2.105, 0.2.106, 0.2.107, 0.2.108, 0.2.109, 0.2.110, 0.2.111, 0.2.112, 0.2.113, 0.2.114, 0.2.115, 0.2.116, 0.2.117, 0.2.118, 0.2.119, 0.2.120, 0.2.122, 0.2.123, 0.2.124, 0.2.126, 0.2.127, 0.2.127.post1, 0.2.128, 0.2.129, 0.2.130, 0.2.130.post1, 0.2.131, 0.2.132, 0.2.133)
ERROR: No matching distribution found for hail==0.2.108

Quitting from lines 69-79 [do17] (large_t2t.Rmd)
Error: processing vignette 'large_t2t.Rmd' failed with diagnostics:
failed to install additional packages via pip
--- failed re-building ‘large_t2t.Rmd’

--- re-building ‘ukbb.Rmd’ using rmarkdown
--- finished re-building ‘ukbb.Rmd’

SUMMARY: processing the following file failed:
  ‘large_t2t.Rmd’

Error: Vignette re-building failed.
Execution halted