Lori Shepherd
| Snapshot Date: 2025-07-28 13:40 -0400 (Mon, 28 Jul 2025) |
| git_url: https://git.bioconductor.org/packages/BiocFileCache |
| git_branch: RELEASE_3_21 |
| git_last_commit: 3d619b5 |
| git_last_commit_date: 2025-07-17 15:00:16 -0400 (Thu, 17 Jul 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-07-31 11:47 -0400 (Thu, 31 Jul 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4823 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4565 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4603 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4544 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 185/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocFileCache 2.16.1 (landing page) Lori Shepherd
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the BiocFileCache package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocFileCache.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: BiocFileCache |
| Version: 2.16.1 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocFileCache |
| StartedAt: 2025-07-28 23:02:29 -0000 (Mon, 28 Jul 2025) |
| EndedAt: 2025-07-28 23:06:44 -0000 (Mon, 28 Jul 2025) |
| EllapsedTime: 255.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocFileCache
###
##############################################################################
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* checking for file ‘BiocFileCache/DESCRIPTION’ ... OK
* preparing ‘BiocFileCache’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocFileCache.Rmd’ using rmarkdown
--- finished re-building ‘BiocFileCache.Rmd’
--- re-building ‘BiocFileCache_Troubleshooting.Rmd’ using rmarkdown
--- finished re-building ‘BiocFileCache_Troubleshooting.Rmd’
--- re-building ‘BiocFileCache_UseCases.Rmd’ using rmarkdown
Quitting from BiocFileCache_UseCases.Rmd:191-221 [ensemblremote]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `bfcrpath()`:
! not all 'rnames' found or unique.
---
Backtrace:
▆
1. ├─BiocFileCache::bfcrpath(bfc, c(url, url2))
2. └─BiocFileCache::bfcrpath(bfc, c(url, url2))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BiocFileCache_UseCases.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘BiocFileCache_UseCases.Rmd’
SUMMARY: processing the following file failed:
‘BiocFileCache_UseCases.Rmd’
Error: Vignette re-building failed.
Execution halted