| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-29 10:14 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4694 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 189/2415 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocAzul 1.0.0 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for BiocAzul in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BiocAzul package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocAzul.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocAzul |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocAzul |
| StartedAt: 2026-04-28 16:52:19 -0400 (Tue, 28 Apr 2026) |
| EndedAt: 2026-04-28 16:52:28 -0400 (Tue, 28 Apr 2026) |
| EllapsedTime: 9.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocAzul
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* checking for file ‘BiocAzul/DESCRIPTION’ ... OK
* preparing ‘BiocAzul’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BiocAzul.Rmd’ using rmarkdown
Quitting from BiocAzul.Rmd:93-96 [project-table]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `projectTable()`:
! Invalid catalog specified. Use 'listCatalogs()' for all catalogs.
---
Backtrace:
▆
1. └─BiocAzul::projectTable(hca, catalog = "dcp57")
2. └─base::stopifnot(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BiocAzul.Rmd' failed with diagnostics:
Invalid catalog specified. Use 'listCatalogs()' for all catalogs.
--- failed re-building ‘BiocAzul.Rmd’
SUMMARY: processing the following file failed:
‘BiocAzul.Rmd’
Error: Vignette re-building failed.
Execution halted