| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-16 11:40 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 226/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiRewire 3.40.0 (landing page) Andrea Gobbi
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the BiRewire package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiRewire |
| Version: 3.40.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire |
| StartedAt: 2025-10-13 15:16:41 -0400 (Mon, 13 Oct 2025) |
| EndedAt: 2025-10-13 15:16:49 -0400 (Mon, 13 Oct 2025) |
| EllapsedTime: 8.6 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘BiRewire’ ...
** this is package ‘BiRewire’ version ‘3.40.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BiRewire.c -o BiRewire.o
BiRewire.c:149:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:221:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:229:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:280:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:332:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:339:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:402:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:454:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:461:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:588:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:652:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:737:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:844:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:893:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:962:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:1096:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:1144:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
BiRewire.c:1183:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
Rprintf("DONE in %d seconds \n",-(tin-tfin));
~~ ^~~~~~~~~~~
%ld
18 warnings generated.
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c interface.c -o interface.o
interface.c:28:23: warning: variable 'e' set but not used [-Wunused-but-set-variable]
size_t i,dim,nc,nr,j,e=0;
^
interface.c:105:68: warning: data argument not used by format string [-Wformat-extra-args]
warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:906:20: note: expanded from macro 'asInteger'
#define asInteger Rf_asInteger
^
interface.c:147:68: warning: data argument not used by format string [-Wformat-extra-args]
warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:906:20: note: expanded from macro 'asInteger'
#define asInteger Rf_asInteger
^
interface.c:167:23: warning: variable 'e' set but not used [-Wunused-but-set-variable]
size_t i,dim,nc,nr,j,e=0;
^
interface.c:252:68: warning: data argument not used by format string [-Wformat-extra-args]
warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:906:20: note: expanded from macro 'asInteger'
#define asInteger Rf_asInteger
^
interface.c:296:68: warning: data argument not used by format string [-Wformat-extra-args]
warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:906:20: note: expanded from macro 'asInteger'
#define asInteger Rf_asInteger
^
6 warnings generated.
clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BiRewire.so BiRewire.o interface.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-BiRewire/00new/BiRewire/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)