Senbai Kang
| Snapshot Date: 2026-01-12 13:45 -0500 (Mon, 12 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/BayesSpace |
| git_branch: RELEASE_3_22 |
| git_last_commit: 0d5d516 |
| git_last_commit_date: 2026-01-08 10:39:36 -0500 (Thu, 08 Jan 2026) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-01-15 11:59 -0500 (Thu, 15 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4886 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4672 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 150/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BayesSpace 1.20.2 (landing page) Senbai Kang
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the BayesSpace package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BayesSpace.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: BayesSpace |
| Version: 1.20.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BayesSpace |
| StartedAt: 2026-01-12 23:43:25 -0000 (Mon, 12 Jan 2026) |
| EndedAt: 2026-01-12 23:44:28 -0000 (Mon, 12 Jan 2026) |
| EllapsedTime: 63.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BayesSpace
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* checking for file ‘BayesSpace/DESCRIPTION’ ... OK
* preparing ‘BayesSpace’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘BayesSpace’ ...
** this is package ‘BayesSpace’ version ‘1.20.2’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++17
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppDist/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppProgress/include' -I/usr/local/include -Iindicators/include -fopenmp -fPIC -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppDist/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppProgress/include' -I/usr/local/include -Iindicators/include -fopenmp -fPIC -g -O2 -Wall -Werror=format-security -c cluster.cpp -o cluster.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppDist/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppProgress/include' -I/usr/local/include -Iindicators/include -fopenmp -fPIC -g -O2 -Wall -Werror=format-security -c compare_enhanced.cpp -o compare_enhanced.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o BayesSpace.so RcppExports.o cluster.o compare_enhanced.o -fopenmp -lopenblas -lgfortran -lm -L/home/biocbuild/R/R-4.5.0/lib -lR
installing to /home/biocbuild/tmp/RtmplEZdgT/Rinst3b587e3be117ee/00LOCK-BayesSpace/00new/BayesSpace/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘xgboost’ 1.7.11.1 is being loaded, but >= 3.0.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘BayesSpace’
* removing ‘/home/biocbuild/tmp/RtmplEZdgT/Rinst3b587e3be117ee/BayesSpace’
-----------------------------------
ERROR: package installation failed