Multiple platform build/check report for BioC 3.20 - BUILD BIN results for BUS on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4679
palomino4	Windows Server 2022 Datacenter	x64	4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"	4414
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4441
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4394
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for BUS on palomino4

To the developers/maintainers of the BUS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BUS

Version: 1.61.0

Command: rm -rf BUS.buildbin-libdir && mkdir BUS.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=BUS.buildbin-libdir BUS_1.61.0.tar.gz

StartedAt: 2024-06-10 13:03:22 -0400 (Mon, 10 Jun 2024)

EndedAt: 2024-06-10 13:04:04 -0400 (Mon, 10 Jun 2024)

EllapsedTime: 42.1 seconds

RetCode: 0

Status: OK

PackageFile: BUS_1.61.0.zip

PackageFileSize: 1.855 MiB

Command output

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###
### Running command:
###
###   rm -rf BUS.buildbin-libdir && mkdir BUS.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=BUS.buildbin-libdir BUS_1.61.0.tar.gz
###
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##############################################################################


* installing *source* package 'BUS' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BUS.cpp -o BUS.o
BUS.cpp: In function 'SEXPREC* MINempirical(SEXP, SEXP, SEXP, SEXP, SEXP)':
BUS.cpp:22:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   22 |       for( int i=0; i<*ncols1; ++i )
      |       ^~~
In file included from F:/biocbuild/bbs-3.20-bioc/R/include/Rdefines.h:41,
                 from BUS.h:9,
                 from BUS.cpp:1:
F:/biocbuild/bbs-3.20-bioc/R/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  372 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
BUS.cpp:27:10: note: in expansion of macro 'UNPROTECT'
   27 |          UNPROTECT(6);
      |          ^~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o BUS.dll tmp.def BUS.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/BUS.buildbin-libdir/00LOCK-BUS/00new/BUS/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BUS' as BUS_1.61.0.zip
* DONE (BUS)