Deepank Korandla
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/AssessORF |
| git_branch: RELEASE_3_20 |
| git_last_commit: 251f2d5 |
| git_last_commit_date: 2024-10-29 10:32:54 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:03 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 105/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AssessORF 1.24.0 (landing page) Deepank Korandla
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
|
To the developers/maintainers of the AssessORF package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AssessORF.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AssessORF |
| Version: 1.24.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:AssessORF.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings AssessORF_1.24.0.tar.gz |
| StartedAt: 2024-12-19 20:03:44 -0500 (Thu, 19 Dec 2024) |
| EndedAt: 2024-12-19 20:09:20 -0500 (Thu, 19 Dec 2024) |
| EllapsedTime: 335.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: AssessORF.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:AssessORF.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings AssessORF_1.24.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/AssessORF.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘AssessORF/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AssessORF’ version ‘1.24.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AssessORF’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) CompareAssessmentResults.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:77-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:79-80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CompareAssessmentResults.Rd:81-83: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
AssessGenes 7.938 0.124 8.063
plot.Assessment 7.195 0.375 7.571
MapAssessmentData 5.896 0.032 5.928
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.20-bioc/meat/AssessORF.Rcheck/00check.log’
for details.
AssessORF.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL AssessORF ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘AssessORF’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AssessORF)
AssessORF.Rcheck/AssessORF-Ex.timings
| name | user | system | elapsed | |
| AssessGenes | 7.938 | 0.124 | 8.063 | |
| CompareAssessmentResults | 0.018 | 0.000 | 0.018 | |
| MapAssessmentData | 5.896 | 0.032 | 5.928 | |
| ScoreAssessmentResults | 0.003 | 0.001 | 0.004 | |
| as.matrix.Assessment | 0.005 | 0.000 | 0.004 | |
| mosaicplot.Assessment | 0.022 | 0.000 | 0.022 | |
| plot.Assessment | 7.195 | 0.375 | 7.571 | |
| print.Assessment | 0.759 | 0.000 | 0.760 | |