Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 14/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ADaCGH2 2.46.0 (landing page) Ramon Diaz-Uriarte
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the ADaCGH2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ADaCGH2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: ADaCGH2 |
Version: 2.46.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL ADaCGH2 |
StartedAt: 2024-11-19 21:16:51 -0000 (Tue, 19 Nov 2024) |
EndedAt: 2024-11-19 21:17:24 -0000 (Tue, 19 Nov 2024) |
EllapsedTime: 33.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL ADaCGH2 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘ADaCGH2’ ... ** using staged installation ** libs using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c r_haarseg.c -o r_haarseg.o r_haarseg.c: In function 'ad_HaarConv': r_haarseg.c:65:12: warning: unused variable 'totalNorm' [-Wunused-variable] 65 | double totalNorm; | ^~~~~~~~~ r_haarseg.c: In function 'ad_FindLocalPeaks': r_haarseg.c:152:43: warning: "/*" within comment [-Wcomment] 152 | }/* for j */ r_haarseg.c:176:43: warning: "/*" within comment [-Wcomment] 176 | }/* for j */ r_haarseg.c:128:16: warning: unused variable 'j' [-Wunused-variable] 128 | int k,j; | ^ r_haarseg.c: In function 'ad_HaarConv': r_haarseg.c:98:26: warning: 'lowWeightSum' may be used uninitialized [-Wmaybe-uninitialized] 98 | lowWeightSum += weight[k-1] - weight[lowEnd]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ r_haarseg.c:59:12: note: 'lowWeightSum' was declared here 59 | double lowWeightSum; | ^~~~~~~~~~~~ r_haarseg.c:96:26: warning: 'lowNonNormed' may be used uninitialized [-Wmaybe-uninitialized] 96 | lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ r_haarseg.c:63:12: note: 'lowNonNormed' was declared here 63 | double lowNonNormed; | ^~~~~~~~~~~~ r_haarseg.c:97:27: warning: 'highNonNormed' may be used uninitialized [-Wmaybe-uninitialized] 97 | highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1]; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ r_haarseg.c:64:12: note: 'highNonNormed' was declared here 64 | double highNonNormed; | ^~~~~~~~~~~~~ gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o ADaCGH2.so init.o r_haarseg.o -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-ADaCGH2/00new/ADaCGH2/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ADaCGH2)