Back to Workflows build report for BioC 3.22

This page was generated on 2025-07-22 16:30 -0400 (Tue, 22 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4791
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4527
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4572
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 17/29HostnameOS / ArchINSTALLBUILD
methylationArrayAnalysis 1.33.1  (landing page)
Jovana Maksimovic
Snapshot Date: 2025-07-22 12:45 -0400 (Tue, 22 Jul 2025)
git_url: https://git.bioconductor.org/packages/methylationArrayAnalysis
git_branch: devel
git_last_commit: 1bfdffc
git_last_commit_date: 2025-05-29 01:04:21 -0400 (Thu, 29 May 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for methylationArrayAnalysis on lconway

To the developers/maintainers of the methylationArrayAnalysis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: methylationArrayAnalysis
Version: 1.33.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
StartedAt: 2025-07-22 13:04:58 -0400 (Tue, 22 Jul 2025)
EndedAt: 2025-07-22 13:12:27 -0400 (Tue, 22 Jul 2025)
EllapsedTime: 449.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
##############################################################################
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* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown
2025-07-22 13:10:20.129 R[68436:271374298] XType: com.apple.fonts is not accessible.
2025-07-22 13:10:20.130 R[68436:271374298] XType: XTFontStaticRegistry is enabled.

Quitting from methylationArrayAnalysis.Rmd:514-523 [gentracks]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'ucscTableQuery': error in evaluating the argument 'x' in selecting a method for function 'genome': 'data' must be of a vector type, was 'NULL'
---
Backtrace:
     ▆
  1. ├─Gviz::UcscTrack(...)
  2. │ └─Gviz:::.cacheTracks(...)
  3. │   ├─Gviz::.doCache(...)
  4. │   │ ├─BiocGenerics::eval(expression, envir = callEnv)
  5. │   │ └─base::eval(expression, envir = callEnv)
  6. │   │   └─base::eval(expression, envir = callEnv)
  7. │   ├─rtracklayer::ucscTableQuery(session, track)
  8. │   └─rtracklayer::ucscTableQuery(session, track)
  9. │     ├─rtracklayer::ucscTableQuery(genome(x), ...)
 10. │     ├─Seqinfo::genome(x)
 11. │     └─rtracklayer::genome(x)
 12. │       ├─Seqinfo::genome(ucscCart(x))
 13. │       ├─rtracklayer:::ucscCart(x)
 14. │       └─rtracklayer:::ucscCart(x)
 15. │         └─rtracklayer (local) .local(object, ...)
 16. │           └─base::matrix(unlist(pairs), nrow = 2)
 17. ├─base::.handleSimpleError(...)
 18. │ └─base (local) h(simpleError(msg, call))
 19. └─base::.handleSimpleError(...)
 20.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'ucscTableQuery': error in evaluating the argument 'x' in selecting a method for function 'genome': 'data' must be of a vector type, was 'NULL'
--- failed re-building ‘methylationArrayAnalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘methylationArrayAnalysis.Rmd’

Error: Vignette re-building failed.
Execution halted