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This page was generated on 2025-09-11 15:41 -0400 (Thu, 11 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4712
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 415/432HostnameOS / ArchINSTALLBUILDCHECK
tuberculosis 1.15.0  (landing page)
Lucas Schiffer
Snapshot Date: 2025-09-11 07:30 -0400 (Thu, 11 Sep 2025)
git_url: https://git.bioconductor.org/packages/tuberculosis
git_branch: devel
git_last_commit: ab59e64
git_last_commit_date: 2025-04-15 10:21:39 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for tuberculosis on nebbiolo2

To the developers/maintainers of the tuberculosis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: tuberculosis
Version: 1.15.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data tuberculosis
StartedAt: 2025-09-11 11:54:38 -0400 (Thu, 11 Sep 2025)
EndedAt: 2025-09-11 11:55:54 -0400 (Thu, 11 Sep 2025)
EllapsedTime: 76.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data tuberculosis
###
##############################################################################
##############################################################################


* checking for file ‘tuberculosis/DESCRIPTION’ ... OK
* preparing ‘tuberculosis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘tuberculosis.Rmd’ using rmarkdown

Quitting from tuberculosis.Rmd:114-122 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'hrbrthemes'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tuberculosis.Rmd' failed with diagnostics:
there is no package called 'hrbrthemes'
--- failed re-building ‘tuberculosis.Rmd’

SUMMARY: processing the following file failed:
  ‘tuberculosis.Rmd’

Error: Vignette re-building failed.
Execution halted