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This page was generated on 2024-11-21 15:01 -0500 (Thu, 21 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4742
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 377/429HostnameOS / ArchINSTALLBUILDCHECK
spatialLIBD 1.19.0  (landing page)
Leonardo Collado-Torres
Snapshot Date: 2024-11-21 07:30 -0500 (Thu, 21 Nov 2024)
git_url: https://git.bioconductor.org/packages/spatialLIBD
git_branch: devel
git_last_commit: 0699221
git_last_commit_date: 2024-10-29 09:51:06 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for spatialLIBD on nebbiolo1

To the developers/maintainers of the spatialLIBD package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: spatialLIBD
Version: 1.19.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spatialLIBD
StartedAt: 2024-11-21 11:37:17 -0500 (Thu, 21 Nov 2024)
EndedAt: 2024-11-21 11:41:39 -0500 (Thu, 21 Nov 2024)
EllapsedTime: 262.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spatialLIBD
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* checking for file ‘spatialLIBD/DESCRIPTION’ ... OK
* preparing ‘spatialLIBD’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TenX_data_download.Rmd’ using rmarkdown

Quitting from lines 284-324 [use_gencode_gtf] (TenX_data_download.Rmd)
Error: processing vignette 'TenX_data_download.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘TenX_data_download.Rmd’

--- re-building ‘guide_to_spatial_registration.Rmd’ using rmarkdown
--- finished re-building ‘guide_to_spatial_registration.Rmd’

--- re-building ‘multi_gene_plots.Rmd’ using rmarkdown

Quitting from lines 340-345 (multi_gene_plots.Rmd)
Error: processing vignette 'multi_gene_plots.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘multi_gene_plots.Rmd’

--- re-building ‘spatialLIBD.Rmd’ using rmarkdown
--- finished re-building ‘spatialLIBD.Rmd’

SUMMARY: processing the following files failed:
  ‘TenX_data_download.Rmd’ ‘multi_gene_plots.Rmd’

Error: Vignette re-building failed.
Execution halted