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This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 317/430HostnameOS / ArchINSTALLBUILDCHECK
qPLEXdata 1.29.0  (landing page)
Kamal Kishore Developer
Snapshot Date: 2025-10-30 07:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/qPLEXdata
git_branch: devel
git_last_commit: dc38cbb
git_last_commit_date: 2025-10-29 10:00:25 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for qPLEXdata on nebbiolo1

To the developers/maintainers of the qPLEXdata package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: qPLEXdata
Version: 1.29.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXdata
StartedAt: 2025-10-30 11:32:27 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 11:33:20 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 53.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXdata
###
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* checking for file ‘qPLEXdata/DESCRIPTION’ ... OK
* preparing ‘qPLEXdata’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘qPLEXdata.Rnw’ using knitr

Quitting from qPLEXdata.Rnw:54-74 [exp1_specificity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'ER - IgG' is not a valid contrast. Available contrasts:
       ER_vs_IgG
---
Backtrace:
    x
 1. \-qPLEXanalyzer::getContrastResults(diffstats = diffstats, contrast = contrasts)
 2.   \-qPLEXanalyzer:::checkArg_getContrastResults(...)
 3.     \-assertthat::assert_that(is_validContrast(contrast, diffstats))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qPLEXdata.Rnw' failed with diagnostics:
'ER - IgG' is not a valid contrast. Available contrasts:
       ER_vs_IgG
--- failed re-building ‘qPLEXdata.Rnw’

SUMMARY: processing the following file failed:
  ‘qPLEXdata.Rnw’

Error: Vignette re-building failed.
Execution halted