Build/check report for BioC 3.21 experimental data - CHECK results for parathyroidSE on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4742
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for parathyroidSE on nebbiolo1

To the developers/maintainers of the parathyroidSE package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: parathyroidSE

Version: 1.45.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:parathyroidSE.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings parathyroidSE_1.45.0.tar.gz

StartedAt: 2024-11-21 13:27:34 -0500 (Thu, 21 Nov 2024)

EndedAt: 2024-11-21 13:31:21 -0500 (Thu, 21 Nov 2024)

EllapsedTime: 227.6 seconds

RetCode: 1

Status: ERROR

CheckDir: parathyroidSE.Rcheck

Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:parathyroidSE.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings parathyroidSE_1.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/parathyroidSE.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘parathyroidSE/DESCRIPTION’ ... OK
* this is package ‘parathyroidSE’ version ‘1.45.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 ERROR
Package suggested but not available: ‘SRAdb’

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/parathyroidSE.Rcheck/00check.log’
for details.

CHECK results for parathyroidSE on nebbiolo1

Summary

Command output

Installation output

Tests output

Example timings