| Back to Build/check report for BioC 3.22 experimental data |
|
This page was generated on 2025-10-21 15:41 -0400 (Tue, 21 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4888 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 143/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| frmaExampleData 1.45.0 (landing page) Matthew N. McCall
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
|
To the developers/maintainers of the frmaExampleData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: frmaExampleData |
| Version: 1.45.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings frmaExampleData_1.45.0.tar.gz |
| StartedAt: 2025-10-21 12:25:31 -0400 (Tue, 21 Oct 2025) |
| EndedAt: 2025-10-21 12:27:23 -0400 (Tue, 21 Oct 2025) |
| EllapsedTime: 111.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: frmaExampleData.Rcheck |
| Warnings: 2 |
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### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings frmaExampleData_1.45.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/frmaExampleData.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘frmaExampleData/DESCRIPTION’ ... OK
* this is package ‘frmaExampleData’ version ‘1.45.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘frmaExampleData’ can be installed ... OK
* checking installed package size ... INFO
installed size is 22.8Mb
sub-directories of 1Mb or more:
data 22.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
Failed with error: 'there is no package called 'affy''
Error loading dataset 'AffyBatch133a':
Error in .requirePackage(package) :
unable to load required package 'affy'
Failed with error: 'there is no package called 'affy''
Error loading dataset 'AffyBatch133atag':
Error in .requirePackage(package) :
unable to load required package 'affy'
Failed with error: 'there is no package called 'affy''
Error loading dataset 'AffyBatch133plus2':
Error in .requirePackage(package) :
unable to load required package 'affy'
Failed with error: 'there is no package called 'affy''
Error loading dataset 'AffyBatchExample':
Error in .requirePackage(package) :
unable to load required package 'affy'
The dataset(s) may use package(s) not declared in Depends/Imports.
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
AffyBatch133a.rda 10.8Mb 6.8Mb xz
AffyBatch133atag.rda 2.2Mb 829Kb xz
AffyBatch133plus2.rda 5.4Mb 1.9Mb xz
AffyBatchExample.rda 4.3Mb 2.3Mb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
‘/home/biocbuild/bbs-3.22-data-experiment/meat/frmaExampleData.Rcheck/00check.log’
for details.
frmaExampleData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL frmaExampleData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘frmaExampleData’ ... ** this is package ‘frmaExampleData’ version ‘1.45.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frmaExampleData)
frmaExampleData.Rcheck/frmaExampleData-Ex.timings
| name | user | system | elapsed | |
| AffyBatch133a | 0.512 | 0.048 | 0.560 | |
| AffyBatch133atag | 0.207 | 0.005 | 0.211 | |
| AffyBatch133plus2 | 0.825 | 0.033 | 0.858 | |
| AffyBatchExample | 0.238 | 0.011 | 0.249 | |