Yuchao Jiang
| Snapshot Date: 2025-10-23 07:30 -0400 (Thu, 23 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/WES.1KG.WUGSC |
| git_branch: devel |
| git_last_commit: 3b03b65 |
| git_last_commit_date: 2025-04-15 09:59:18 -0400 (Tue, 15 Apr 2025) |
| Back to Build/check report for BioC 3.22 experimental data |
|
This page was generated on 2025-10-23 15:41 -0400 (Thu, 23 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4894 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 426/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| WES.1KG.WUGSC 1.41.0 (landing page) Yuchao Jiang
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | |||||||
|
To the developers/maintainers of the WES.1KG.WUGSC package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: WES.1KG.WUGSC |
| Version: 1.41.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:WES.1KG.WUGSC.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings WES.1KG.WUGSC_1.41.0.tar.gz |
| StartedAt: 2025-10-23 13:16:23 -0400 (Thu, 23 Oct 2025) |
| EndedAt: 2025-10-23 13:16:46 -0400 (Thu, 23 Oct 2025) |
| EllapsedTime: 23.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: WES.1KG.WUGSC.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:WES.1KG.WUGSC.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings WES.1KG.WUGSC_1.41.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/WES.1KG.WUGSC.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘WES.1KG.WUGSC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘WES.1KG.WUGSC’ version ‘1.41.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘WES.1KG.WUGSC’ can be installed ... OK
* checking installed package size ... INFO
installed size is 373.9Mb
sub-directories of 1Mb or more:
extdata 373.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.22-data-experiment/meat/WES.1KG.WUGSC.Rcheck/00check.log’
for details.
WES.1KG.WUGSC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL WES.1KG.WUGSC ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘WES.1KG.WUGSC’ ... ** this is package ‘WES.1KG.WUGSC’ version ‘1.41.0’ ** using staged installation ** inst ** help No man pages found in package ‘WES.1KG.WUGSC’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WES.1KG.WUGSC)