Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2025-01-23 15:01 -0500 (Thu, 23 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4604 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 368/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
SingleCellMultiModal 1.19.1 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the SingleCellMultiModal package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SingleCellMultiModal |
Version: 1.19.1 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SingleCellMultiModal_1.19.1.tar.gz |
StartedAt: 2025-01-23 12:45:43 -0500 (Thu, 23 Jan 2025) |
EndedAt: 2025-01-23 12:56:17 -0500 (Thu, 23 Jan 2025) |
EllapsedTime: 633.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SingleCellMultiModal.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SingleCellMultiModal_1.19.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/SingleCellMultiModal.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘SingleCellMultiModal/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SingleCellMultiModal’ version ‘1.19.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SingleCellMultiModal’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CITEseq 11.508 1.514 13.562 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
SingleCellMultiModal.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SingleCellMultiModal ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘SingleCellMultiModal’ ... ** this is package ‘SingleCellMultiModal’ version ‘1.19.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SingleCellMultiModal)
SingleCellMultiModal.Rcheck/SingleCellMultiModal-Ex.timings
name | user | system | elapsed | |
CITEseq | 11.508 | 1.514 | 13.562 | |
GTseq | 0.786 | 0.063 | 1.085 | |
SCoPE2 | 1.014 | 0.130 | 1.410 | |
SingleCellMultiModal-package | 0.006 | 0.007 | 0.014 | |
SingleCellMultiModal | 3.771 | 0.291 | 4.913 | |
ontomap | 0.004 | 0.000 | 0.004 | |
scMultiome | 2.031 | 0.314 | 2.672 | |
scNMT | 3.099 | 0.116 | 3.878 | |
scmmCache | 0 | 0 | 0 | |
seqFISH | 1.454 | 0.097 | 1.895 | |