| Back to Build/check report for BioC 3.21 experimental data |
|
This page was generated on 2025-01-07 15:01 -0500 (Tue, 07 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4756 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 322/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| RforProteomics 1.45.0 (landing page) Laurent Gatto
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
|
To the developers/maintainers of the RforProteomics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RforProteomics |
| Version: 1.45.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics |
| StartedAt: 2025-01-07 11:33:00 -0500 (Tue, 07 Jan 2025) |
| EndedAt: 2025-01-07 11:35:22 -0500 (Tue, 07 Jan 2025) |
| EllapsedTime: 141.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics ### ############################################################################## ############################################################################## * checking for file ‘RforProteomics/DESCRIPTION’ ... OK * preparing ‘RforProteomics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RProtVis.Rmd’ using rmarkdown --- finished re-building ‘RProtVis.Rmd’ --- re-building ‘RforProteomics.Rmd’ using rmarkdown starting worker pid=536509 on localhost:11182 at 11:35:12.901 starting worker pid=536508 on localhost:11182 at 11:35:12.908 Loading required package: mzID Loading required package: mzID loaded mzID and set parent environment loaded mzID and set parent environment reading 55merge_omssa.mzid... reading 55merge_tandem.mzid... 55merge_omssa.mzid DONE! 55merge_tandem.mzid DONE! Quitting from lines 526-530 [mzxmlqnt] (RforProteomics.Rmd) Error: processing vignette 'RforProteomics.Rmd' failed with diagnostics: Can't access URL(s): ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001//TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzXML ftp://ftp.pride.ebi.ac.uk/pride-archive/2012/03/PXD000001//TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzXML --- failed re-building ‘RforProteomics.Rmd’ SUMMARY: processing the following file failed: ‘RforProteomics.Rmd’ Error: Vignette re-building failed. Execution halted