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This page was generated on 2025-07-22 15:41 -0400 (Tue, 22 Jul 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4791 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 206/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
KEGGandMetacoreDzPathwaysGEO 1.29.0 (landing page) Gaurav Bhatti
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the KEGGandMetacoreDzPathwaysGEO package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: KEGGandMetacoreDzPathwaysGEO |
Version: 1.29.0 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.29.0.tar.gz |
StartedAt: 2025-07-22 12:34:18 -0400 (Tue, 22 Jul 2025) |
EndedAt: 2025-07-22 12:35:15 -0400 (Tue, 22 Jul 2025) |
EllapsedTime: 57.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.2 LTS * using session charset: UTF-8 * checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.29.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK * checking installed package size ... INFO installed size is 98.7Mb sub-directories of 1Mb or more: data 98.5Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ... ** this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.29.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGandMetacoreDzPathwaysGEO)
KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings
name | user | system | elapsed | |
GSE1145 | 0.317 | 0.026 | 0.342 | |
GSE11906 | 2.958 | 0.042 | 3.001 | |
GSE14924_CD4 | 0.238 | 0.010 | 0.248 | |
GSE14924_CD8 | 0.235 | 0.012 | 0.247 | |
GSE16759 | 0.318 | 0.005 | 0.322 | |
GSE19420 | 0.207 | 0.010 | 0.218 | |
GSE20164 | 0.069 | 0.001 | 0.070 | |
GSE22780 | 0.209 | 0.010 | 0.218 | |
GSE23878 | 0.757 | 0.022 | 0.782 | |
GSE24739_G0 | 0.437 | 0.002 | 0.440 | |
GSE24739_G1 | 0.437 | 0.007 | 0.444 | |
GSE30153 | 0.545 | 0.009 | 0.555 | |
GSE32676 | 0.716 | 0.011 | 0.728 | |
GSE38666_epithelia | 0.313 | 0.008 | 0.322 | |
GSE38666_stroma | 0.197 | 0.004 | 0.201 | |
GSE4183 | 0.225 | 0.017 | 0.242 | |
GSE42057 | 0.944 | 0.013 | 0.958 | |
GSE7305 | 0.683 | 0.012 | 0.695 | |
KEGGandMetacoreDzPathwaysGEO-package | 0.59 | 0.02 | 0.61 | |