| Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2025-10-21 15:41 -0400 (Tue, 21 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4888 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 211/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| KEGGandMetacoreDzPathwaysGEO 1.29.0 (landing page) Gaurav Bhatti
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the KEGGandMetacoreDzPathwaysGEO package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: KEGGandMetacoreDzPathwaysGEO |
| Version: 1.29.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.29.0.tar.gz |
| StartedAt: 2025-10-21 12:36:39 -0400 (Tue, 21 Oct 2025) |
| EndedAt: 2025-10-21 12:37:36 -0400 (Tue, 21 Oct 2025) |
| EllapsedTime: 56.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... INFO
installed size is 98.7Mb
sub-directories of 1Mb or more:
data 98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ... ** this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.29.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGandMetacoreDzPathwaysGEO)
KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings
| name | user | system | elapsed | |
| GSE1145 | 0.317 | 0.019 | 0.337 | |
| GSE11906 | 2.965 | 0.042 | 3.007 | |
| GSE14924_CD4 | 0.235 | 0.010 | 0.246 | |
| GSE14924_CD8 | 0.236 | 0.010 | 0.247 | |
| GSE16759 | 0.317 | 0.007 | 0.325 | |
| GSE19420 | 0.209 | 0.012 | 0.221 | |
| GSE20164 | 0.071 | 0.000 | 0.070 | |
| GSE22780 | 0.211 | 0.009 | 0.220 | |
| GSE23878 | 0.752 | 0.017 | 0.770 | |
| GSE24739_G0 | 0.434 | 0.009 | 0.443 | |
| GSE24739_G1 | 0.439 | 0.009 | 0.448 | |
| GSE30153 | 0.549 | 0.009 | 0.558 | |
| GSE32676 | 0.710 | 0.016 | 0.726 | |
| GSE38666_epithelia | 0.311 | 0.011 | 0.322 | |
| GSE38666_stroma | 0.201 | 0.006 | 0.208 | |
| GSE4183 | 0.242 | 0.009 | 0.251 | |
| GSE42057 | 0.950 | 0.013 | 0.963 | |
| GSE7305 | 0.691 | 0.007 | 0.698 | |
| KEGGandMetacoreDzPathwaysGEO-package | 0.596 | 0.020 | 0.618 | |