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This page was generated on 2026-03-17 15:01 -0400 (Tue, 17 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4846
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 191/433HostnameOS / ArchINSTALLBUILDCHECK
Hiiragi2013 1.47.1  (landing page)
Wolfgang Huber
Snapshot Date: 2026-03-17 07:00 -0400 (Tue, 17 Mar 2026)
git_url: https://git.bioconductor.org/packages/Hiiragi2013
git_branch: devel
git_last_commit: 3d9836c
git_last_commit_date: 2026-03-12 09:48:37 -0400 (Thu, 12 Mar 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped


BUILD results for Hiiragi2013 on nebbiolo1

To the developers/maintainers of the Hiiragi2013 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Hiiragi2013
Version: 1.47.1
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Hiiragi2013
StartedAt: 2026-03-17 11:23:58 -0400 (Tue, 17 Mar 2026)
EndedAt: 2026-03-17 11:24:23 -0400 (Tue, 17 Mar 2026)
EllapsedTime: 24.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Hiiragi2013
###
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* checking for file ‘Hiiragi2013/DESCRIPTION’ ... OK
* preparing ‘Hiiragi2013’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Hiiragi2013.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Error: processing vignette 'Hiiragi2013.Rnw' failed with diagnostics:
 chunk 10 (label = figHistSds) 
Error in rowSds(exprs(xe)) : could not find function "rowSds"

--- failed re-building ‘Hiiragi2013.Rnw’

SUMMARY: processing the following file failed:
  ‘Hiiragi2013.Rnw’

Error: Vignette re-building failed.
Execution halted