| Back to Build/check report for BioC 3.23 experimental data | 
  | 
This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4428 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 155/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| GSBenchMark 1.31.0  (landing page) Bahman Afsari 
  | nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
| 
To the developers/maintainers of the GSBenchMark package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.  | 
| Package: GSBenchMark | 
| Version: 1.31.0 | 
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings GSBenchMark_1.31.0.tar.gz | 
| StartedAt: 2025-10-30 12:16:26 -0400 (Thu, 30 Oct 2025) | 
| EndedAt: 2025-10-30 12:17:02 -0400 (Thu, 30 Oct 2025) | 
| EllapsedTime: 36.4 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: GSBenchMark.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings GSBenchMark_1.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-data-experiment/meat/GSBenchMark.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ...* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
GSBenchMark.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL GSBenchMark ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘GSBenchMark’ ... ** this is package ‘GSBenchMark’ version ‘1.31.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSBenchMark)
GSBenchMark.Rcheck/GSBenchMark-Ex.timings
| name | user | system | elapsed | |
| GSBenchMarkDatasets | 0.207 | 0.019 | 0.227 | |
| bipolar_GDS2190 | 0.211 | 0.011 | 0.221 | |
| breast_GDS807 | 0.218 | 0.010 | 0.232 | |
| diracpathways | 0.007 | 0.000 | 0.007 | |
| exprsdata | 0.326 | 0.019 | 0.345 | |
| leukemia_GSEA | 0.200 | 0.013 | 0.213 | |
| logexprsdata | 0.325 | 0.027 | 0.353 | |
| marfan_GDS2960 | 0.114 | 0.013 | 0.127 | |
| melanoma_GDS2735 | 0.277 | 0.026 | 0.303 | |
| parkinsons_GDS2519 | 0.464 | 0.054 | 0.519 | |
| phenotypes | 0.342 | 0.058 | 0.401 | |
| prostate_GDS2545_m_nf | 0.185 | 0.015 | 0.200 | |
| prostate_GDS2545_m_p | 0.355 | 0.019 | 0.374 | |
| prostate_GDS2545_p_nf | 0.319 | 0.022 | 0.341 | |
| sarcoma_data | 0.562 | 0.069 | 0.632 | |
| squamous_GDS2520 | 0.206 | 0.010 | 0.216 | |