Back to Build/check report for BioC 3.21 experimental data
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-02-25 15:01 -0500 (Tue, 25 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 32/430HostnameOS / ArchINSTALLBUILDCHECK
BloodCancerMultiOmics2017 1.27.0  (landing page)
Malgorzata Oles
Snapshot Date: 2025-02-25 07:30 -0500 (Tue, 25 Feb 2025)
git_url: https://git.bioconductor.org/packages/BloodCancerMultiOmics2017
git_branch: devel
git_last_commit: ce612ea
git_last_commit_date: 2024-10-29 09:47:51 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for BloodCancerMultiOmics2017 on nebbiolo1

To the developers/maintainers of the BloodCancerMultiOmics2017 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BloodCancerMultiOmics2017
Version: 1.27.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BloodCancerMultiOmics2017
StartedAt: 2025-02-25 11:07:56 -0500 (Tue, 25 Feb 2025)
EndedAt: 2025-02-25 11:09:01 -0500 (Tue, 25 Feb 2025)
EllapsedTime: 64.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BloodCancerMultiOmics2017
###
##############################################################################
##############################################################################


* checking for file ‘BloodCancerMultiOmics2017/DESCRIPTION’ ... OK
* preparing ‘BloodCancerMultiOmics2017’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BloodCancerMultiOmics2017-dataOverview.Rmd’ using rmarkdown
--- finished re-building ‘BloodCancerMultiOmics2017-dataOverview.Rmd’

--- re-building ‘BloodCancerMultiOmics2017.Rmd’ using rmarkdown

Quitting from lines 46-91 [unnamed-chunk-2] (BloodCancerMultiOmics2017.Rmd)
Error: processing vignette 'BloodCancerMultiOmics2017.Rmd' failed with diagnostics:
there is no package called 'IHW'
--- failed re-building ‘BloodCancerMultiOmics2017.Rmd’

SUMMARY: processing the following file failed:
  ‘BloodCancerMultiOmics2017.Rmd’

Error: Vignette re-building failed.
Execution halted