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This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 26/430HostnameOS / ArchINSTALLBUILDCHECK
BioPlex 1.17.0  (landing page)
Ludwig Geistlinger
Snapshot Date: 2025-10-30 07:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/BioPlex
git_branch: devel
git_last_commit: 6b6b169
git_last_commit_date: 2025-10-29 10:05:00 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for BioPlex on nebbiolo1

To the developers/maintainers of the BioPlex package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BioPlex
Version: 1.17.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex
StartedAt: 2025-10-30 11:07:40 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 11:09:17 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 96.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex
###
##############################################################################
##############################################################################


* checking for file ‘BioPlex/DESCRIPTION’ ... OK
* preparing ‘BioPlex’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BasicChecks.Rmd’ using rmarkdown

Quitting from BasicChecks.Rmd:180-183 [cnv-seq]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! download failed; see warnings()
---
Backtrace:
    ▆
 1. └─BioPlex::getHEK293GenomeTrack(track = "cnv.hmm", cell.line = "293T")
 2.   └─BioPlex:::.getResourceFromCache2(rname)
 3.     ├─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
 4.     └─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
 5.       └─BiocFileCache:::.util_download_and_rename(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BasicChecks.Rmd' failed with diagnostics:
download failed; see warnings()
--- failed re-building ‘BasicChecks.Rmd’

--- re-building ‘BioPlex.Rmd’ using rmarkdown

Quitting from BioPlex.Rmd:254-257 [cnv]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! download failed; see warnings()
---
Backtrace:
    ▆
 1. └─BioPlex::getHEK293GenomeTrack(track = "cnv.hmm", cell.line = "293T")
 2.   └─BioPlex:::.getResourceFromCache2(rname)
 3.     ├─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
 4.     └─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
 5.       └─BiocFileCache:::.util_download_and_rename(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BioPlex.Rmd' failed with diagnostics:
download failed; see warnings()
--- failed re-building ‘BioPlex.Rmd’

SUMMARY: processing the following files failed:
  ‘BasicChecks.Rmd’ ‘BioPlex.Rmd’

Error: Vignette re-building failed.
Execution halted