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This page was generated on 2025-01-07 15:01 -0500 (Tue, 07 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4756
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 27/430HostnameOS / ArchINSTALLBUILDCHECK
BioPlex 1.13.0  (landing page)
Ludwig Geistlinger
Snapshot Date: 2025-01-07 07:30 -0500 (Tue, 07 Jan 2025)
git_url: https://git.bioconductor.org/packages/BioPlex
git_branch: devel
git_last_commit: 8762199
git_last_commit_date: 2024-10-29 09:53:57 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for BioPlex on nebbiolo1

To the developers/maintainers of the BioPlex package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BioPlex
Version: 1.13.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex
StartedAt: 2025-01-07 11:06:08 -0500 (Tue, 07 Jan 2025)
EndedAt: 2025-01-07 11:08:00 -0500 (Tue, 07 Jan 2025)
EllapsedTime: 111.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex
###
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* checking for file ‘BioPlex/DESCRIPTION’ ... OK
* preparing ‘BioPlex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BasicChecks.Rmd’ using rmarkdown

Quitting from lines 99-100 [bioplex293T] (BasicChecks.Rmd)
Error: processing vignette 'BasicChecks.Rmd' failed with diagnostics:
download failed; see warnings()
--- failed re-building ‘BasicChecks.Rmd’

--- re-building ‘BioPlex.Rmd’ using rmarkdown

Quitting from lines 118-121 [bioplex293T] (BioPlex.Rmd)
Error: processing vignette 'BioPlex.Rmd' failed with diagnostics:
download failed; see warnings()
--- failed re-building ‘BioPlex.Rmd’

SUMMARY: processing the following files failed:
  ‘BasicChecks.Rmd’ ‘BioPlex.Rmd’

Error: Vignette re-building failed.
Execution halted