Build/check report for BioC 3.23 experimental data - BUILD results for BeadArrayUseCases on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4428
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BUILD results for BeadArrayUseCases on nebbiolo1

To the developers/maintainers of the BeadArrayUseCases package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BeadArrayUseCases

Version: 1.49.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BeadArrayUseCases

StartedAt: 2025-10-30 11:07:27 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 11:07:58 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 30.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BeadArrayUseCases
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* checking for file ‘BeadArrayUseCases/DESCRIPTION’ ... OK
* preparing ‘BeadArrayUseCases’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BeadArrayUseCases.rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element,
    setdiff, setequal, union


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames,
    sapply, saveRDS, table, tapply, unique, unsplit,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: hexbin
Welcome to beadarray version 2.61.0
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)

Error: processing vignette 'BeadArrayUseCases.rnw' failed with diagnostics:
 chunk 4 
Error in library(illuminaHumanv2.db) : 
  there is no package called ‘illuminaHumanv2.db’

--- failed re-building ‘BeadArrayUseCases.rnw’

SUMMARY: processing the following file failed:
  ‘BeadArrayUseCases.rnw’

Error: Vignette re-building failed.
Execution halted