| Back to Build/check report for BioC 3.23 annotations |
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This page was generated on 2025-11-26 07:00 -0500 (Wed, 26 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4865 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 37/49 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| org.Hbacteriophora.eg.db 0.99.1 (landing page) Kabilan S
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
|
To the developers/maintainers of the org.Hbacteriophora.eg.db package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: org.Hbacteriophora.eg.db |
| Version: 0.99.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data org.Hbacteriophora.eg.db |
| StartedAt: 2025-11-26 06:02:40 -0500 (Wed, 26 Nov 2025) |
| EndedAt: 2025-11-26 06:03:03 -0500 (Wed, 26 Nov 2025) |
| EllapsedTime: 23.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data org.Hbacteriophora.eg.db
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* checking for file ‘org.Hbacteriophora.eg.db/DESCRIPTION’ ... OK
* preparing ‘org.Hbacteriophora.eg.db’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Hbacteriophora_annotation_vignette.Rmd’ using rmarkdown
Quitting from Hbacteriophora_annotation_vignette.Rmd:31-35 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! AH121717 is an OrgDb resource.
orgDb resources are generated for specific biocversions.
Requested resource works with biocversion: 3.22
To find a resource appropriate for your biocversion try the following query:
query(ah,'org.Hbacteriophora.eg.db')
---
Backtrace:
▆
1. ├─ah[["AH121717"]]
2. └─ah[["AH121717"]]
3. └─AnnotationHub (local) .local(x, i, j = j, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Hbacteriophora_annotation_vignette.Rmd' failed with diagnostics:
AH121717 is an OrgDb resource.
orgDb resources are generated for specific biocversions.
Requested resource works with biocversion: 3.22
To find a resource appropriate for your biocversion try the following query:
query(ah,'org.Hbacteriophora.eg.db')
--- failed re-building ‘Hbacteriophora_annotation_vignette.Rmd’
SUMMARY: processing the following file failed:
‘Hbacteriophora_annotation_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted