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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OSTA
###
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* checking for file ‘OSTA/DESCRIPTION’ ... OK
* preparing ‘OSTA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘stub.Rmd’ using rmarkdown
--- finished re-building ‘stub.Rmd’

quarto render ../inst/

[ 1/41] index.qmd


processing file: index.qmd
1/4 [unnamed-chunk-1]
2/4                  
3/4 [carousel]       
4/4                  
output file: index.knit.md


[ 2/41] pages/bkg-introduction.qmd


processing file: bkg-introduction.qmd
1/5                  
2/5 [unnamed-chunk-1]
3/5                  
4/5 [unnamed-chunk-2]
5/5                  
output file: bkg-introduction.knit.md

Warning message:
In readLines(input) : incomplete final line found on 'bkg-introduction.qmd'

[ 3/41] pages/bkg-spatial-omics.qmd


processing file: bkg-spatial-omics.qmd
1/5                  
2/5 [unnamed-chunk-1]
3/5                  
4/5 [unnamed-chunk-2]
5/5                  
output file: bkg-spatial-omics.knit.md

Warning message:
In readLines(input) :
  incomplete final line found on 'bkg-spatial-omics.qmd'

[ 4/41] pages/bkg-infrastructure.qmd


processing file: bkg-infrastructure.qmd
1/9                        
2/9 [unnamed-chunk-1]      
3/9                        
4/9 [fig-spatialexperiment]
5/9                        
6/9 [fig-spatialdata]      
7/9                        
8/9 [unnamed-chunk-2]      
9/9                        
output file: bkg-infrastructure.knit.md

Warning message:
In readLines(input) :
  incomplete final line found on 'bkg-infrastructure.qmd'

[ 5/41] pages/bkg-ecosystem.qmd


processing file: bkg-ecosystem.qmd
1/23                   
2/23 [unnamed-chunk-1] 
3/23                   
4/23 [unnamed-chunk-2] 
Error: download failed; see warnings()

Quitting from bkg-ecosystem.qmd:48-51 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! download failed; see warnings()
---
Backtrace:
     ▆
  1. └─BiocPkgTools::biocExplore()
  2.   └─BiocPkgTools::get_bioc_data()
  3.     ├─BiocPkgTools:::process_data(...)
  4.     │ └─BiocPkgTools:::summarise_dl_stats(raw_dl_stats)
  5.     │   ├─dplyr::summarise(...)
  6.     │   └─dplyr::group_by(dl_stats, .data$Package)
  7.     └─BiocPkgTools::biocDownloadStats()
  8.       └─BiocPkgTools::biocPkgList(repo = repo_name)
  9.         └─base::lapply(...)
 10.           └─BiocPkgTools (local) FUN(X[[i]], ...)
 11.             └─BiocPkgTools:::.get_VIEWS(version = version, type = r)
 12.               └─BiocPkgTools:::.read_VIEWS_url(views_url)
 13.                 └─BiocPkgTools:::.cache_url_file(url)
 14.                   ├─BiocFileCache::bfcdownload(x = bfc, rid = bquery[["rid"]], ask = FALSE)
 15.                   └─BiocFileCache::bfcdownload(x = bfc, rid = bquery[["rid"]], ask = FALSE)
 16.                     └─BiocFileCache:::.util_download_and_rename(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Execution halted
WARN: Error encountered when rendering files
make: *** [Makefile:4: render] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted