Alan O'Callaghan
| Snapshot Date: 2025-11-19 06:30 -0500 (Wed, 19 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/OSCA |
| git_branch: devel |
| git_last_commit: 85c2837 |
| git_last_commit_date: 2025-10-29 10:12:46 -0500 (Wed, 29 Oct 2025) |
| Back to Books build report for BioC 3.23 |
This page was generated on 2025-11-19 14:30 -0500 (Wed, 19 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4827 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4600 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4564 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 4/11 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| OSCA 1.21.0 (landing page) Alan O'Callaghan
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | |||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | |||||||||
|
To the developers/maintainers of the OSCA package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OSCA |
| Version: 1.21.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OSCA |
| StartedAt: 2025-11-19 06:46:27 -0500 (Wed, 19 Nov 2025) |
| EndedAt: 2025-11-19 06:46:42 -0500 (Wed, 19 Nov 2025) |
| EllapsedTime: 14.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OSCA
###
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* checking for file ‘OSCA/DESCRIPTION’ ... OK
* preparing ‘OSCA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘stub.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'stub.knit'
--- finished re-building ‘stub.Rmd’
"/Library/Frameworks/R.framework/Resources/bin/R" -e "work.dir <- rebook::bookCache('OSCA'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)"
R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"
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Platform: x86_64-apple-darwin20
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Type 'license()' or 'licence()' for distribution details.
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> work.dir <- rebook::bookCache('OSCA'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)
#
#
# processing file: contents.Rmd
# 1/12
# 2/12 [setup]
# 3/12
# 4/12 [unnamed-chunk-1]
# 5/12
# 6/12 [unnamed-chunk-2]
# Error in packageDescription("OSCA.basic")$Description :
# $ operator is invalid for atomic vectors
# Calls: <Anonymous> ... eval -> withCallingHandlers -> withVisible -> eval -> eval
#
# Quitting from contents.Rmd:26-32 [unnamed-chunk-2]
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# <error/rlang_error>
# Error in `packageDescription("OSCA.basic")$Description`:
# ! $ operator is invalid for atomic vectors
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#
# Execution halted
Error in compileChapter(path) :
failed to compile '~/Library/Caches/rebook/OSCA/1.21.0/contents.Rmd'
Calls: <Anonymous> ... .precompile_book -> .locked_compile_chapter -> compileChapter
Execution halted
make: *** [compiled] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted