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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OSCA.workflows
###
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* checking for file ‘OSCA.workflows/DESCRIPTION’ ... OK
* preparing ‘OSCA.workflows’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘stub.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'stub.knit'
--- finished re-building ‘stub.Rmd’

"/Library/Frameworks/R.framework/Resources/bin/R" -e "work.dir <- rebook::bookCache('OSCA.workflows'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)"

R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"
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Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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> work.dir <- rebook::bookCache('OSCA.workflows'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)
# 
# 
# processing file: tenx-unfiltered-pbmc4k.Rmd
# 1/50                             
# 2/50 [unref-setup]               
# 3/50                             
# 4/50 [loading]                   
# 5/50                             
# 6/50 [gene-annotation]           
# 7/50                             
# Error in system.file("rebook", "references.csv", package = package, mustWork = error) : 
#   no file found
# Calls: <Anonymous> ... eval -> link -> .load_package_references -> system.file
# 
# Quitting from tenx-unfiltered-pbmc4k.Rmd:39-39
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# <error/rlang_error>
# Error in `system.file()`:
# ! no file found
# ---
# Backtrace:
#     ▆
#  1. └─rebook::link("qc-droplets", "OSCA.advanced")
#  2.   └─rebook:::.load_package_references(package, error = error)
#  3.     └─base::system.file(...)
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# 
# Execution halted

Error in compileChapter(path) : 
  failed to compile '~/Library/Caches/rebook/OSCA.workflows/1.19.0/tenx-unfiltered-pbmc4k.Rmd'
Calls: <Anonymous> ... .precompile_book -> .locked_compile_chapter -> compileChapter
Execution halted
make: *** [compiled] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted